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TMEM169 (transmembrane protein 169)

Identity

Alias_symbol (synonym)FLJ34263
Other alias-
HGNC (Hugo) TMEM169
LocusID (NCBI) 92691
Atlas_Id 74831
Location 2q35  [Link to chromosome band 2q35]
Location_base_pair Starts at 216081866 and ends at 216102783 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM169   25130
Cards
Entrez_Gene (NCBI)TMEM169  92691  transmembrane protein 169
Aliases
GeneCards (Weizmann)TMEM169
Ensembl hg19 (Hinxton)ENSG00000163449 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000163449 [Gene_View]  chr2:216081866-216102783 [Contig_View]  TMEM169 [Vega]
ICGC DataPortalENSG00000163449
TCGA cBioPortalTMEM169
AceView (NCBI)TMEM169
Genatlas (Paris)TMEM169
WikiGenes92691
SOURCE (Princeton)TMEM169
Genetics Home Reference (NIH)TMEM169
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM169  -     chr2:216081866-216102783 +  2q35   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM169  -     2q35   [Description]    (hg19-Feb_2009)
EnsemblTMEM169 - 2q35 [CytoView hg19]  TMEM169 - 2q35 [CytoView hg38]
Mapping of homologs : NCBITMEM169 [Mapview hg19]  TMEM169 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK091582 AK172731 AK313536 AW291087 BC008604
RefSeq transcript (Entrez)NM_001142310 NM_001142311 NM_001142312 NM_138390
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMEM169
Cluster EST : UnigeneHs.334916 [ NCBI ]
CGAP (NCI)Hs.334916
Alternative Splicing GalleryENSG00000163449
Gene ExpressionTMEM169 [ NCBI-GEO ]   TMEM169 [ EBI - ARRAY_EXPRESS ]   TMEM169 [ SEEK ]   TMEM169 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM169 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)92691
GTEX Portal (Tissue expression)TMEM169
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96HH4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96HH4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96HH4
Splice isoforms : SwissVarQ96HH4
PhosPhoSitePlusQ96HH4
Domains : Interpro (EBI)TMEM169   
Domain families : Pfam (Sanger)TMEM169 (PF15052)   
Domain families : Pfam (NCBI)pfam15052   
Conserved Domain (NCBI)TMEM169
DMDM Disease mutations92691
Blocks (Seattle)TMEM169
SuperfamilyQ96HH4
Human Protein AtlasENSG00000163449
Peptide AtlasQ96HH4
HPRD14293
IPIIPI00063093   IPI00984514   IPI00925756   IPI00926428   
Protein Interaction databases
DIP (DOE-UCLA)Q96HH4
IntAct (EBI)Q96HH4
FunCoupENSG00000163449
BioGRIDTMEM169
STRING (EMBL)TMEM169
ZODIACTMEM169
Ontologies - Pathways
QuickGOQ96HH4
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkTMEM169
Atlas of Cancer Signalling NetworkTMEM169
Wikipedia pathwaysTMEM169
Orthology - Evolution
OrthoDB92691
GeneTree (enSembl)ENSG00000163449
Phylogenetic Trees/Animal Genes : TreeFamTMEM169
HOVERGENQ96HH4
HOGENOMQ96HH4
Homologs : HomoloGeneTMEM169
Homology/Alignments : Family Browser (UCSC)TMEM169
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM169 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM169
dbVarTMEM169
ClinVarTMEM169
1000_GenomesTMEM169 
Exome Variant ServerTMEM169
ExAC (Exome Aggregation Consortium)TMEM169 (select the gene name)
Genetic variants : HAPMAP92691
Genomic Variants (DGV)TMEM169 [DGVbeta]
DECIPHERTMEM169 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM169 
Mutations
ICGC Data PortalTMEM169 
TCGA Data PortalTMEM169 
Broad Tumor PortalTMEM169
OASIS PortalTMEM169 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM169  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM169
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM169
DgiDB (Drug Gene Interaction Database)TMEM169
DoCM (Curated mutations)TMEM169 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM169 (select a term)
intoGenTMEM169
Cancer3DTMEM169(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTMEM169
Genetic Testing Registry TMEM169
NextProtQ96HH4 [Medical]
TSGene92691
GENETestsTMEM169
Target ValidationTMEM169
Huge Navigator TMEM169 [HugePedia]
snp3D : Map Gene to Disease92691
BioCentury BCIQTMEM169
ClinGenTMEM169
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD92691
Chemical/Pharm GKB GenePA162405911
Clinical trialTMEM169
Miscellaneous
canSAR (ICR)TMEM169 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM169
EVEXTMEM169
GoPubMedTMEM169
iHOPTMEM169
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:41:45 CEST 2017

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