TMEM16J (transmembrane protein 16J)

Identity

Other names	PIG5
	TP53I5
HGNC	TMEM16J
Location	11p15.5
Location_base_pair	Starts at 407930 and ends at 432011 bp from pter ( according to hg18-March_2006).
Note	Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

External links

	Nomenclature
HGNC	TMEM16J   20679
Entrez_Gene	TMEM16J  338440  transmembrane protein 16J
	Cards
GeneCards	TMEM16J
Ensembl	ENSG00000185101 [Gene_View]  TMEM16J [Vega]
Genatlas	TMEM16J
	Genomic and cartography
GoldenPath	TMEM16J  -  11p15.5   chr11:407930-432011 -  11p15.5   [Description]    (hg18-March_2006)
Ensembl	TMEM16J - 11p15.5 [CytoView]
NCBI	Mapview
HomoloGene	TMEM16J
	Gene and transcription
Genbank	AI986229 [ ENTREZ ]
Genbank	AK026923 [ ENTREZ ]
Genbank	AK074088 [ ENTREZ ]
Genbank	AK096874 [ ENTREZ ]
Genbank	AL832289 [ ENTREZ ]
RefSeq	NM_001012302 [ SRS ]    NM_001012302 [ ENTREZ ]
RefSeq	AC_000054 [ SRS ]    AC_000054 [ ENTREZ ]
RefSeq	AC_000143 [ SRS ]    AC_000143 [ ENTREZ ]
RefSeq	NC_000011 [ SRS ]    NC_000011 [ ENTREZ ]
RefSeq	NT_035113 [ SRS ]    NT_035113 [ ENTREZ ]
RefSeq	NW_001838016 [ SRS ]    NW_001838016 [ ENTREZ ]
RefSeq	NW_924962 [ SRS ]    NW_924962 [ ENTREZ ]
CCDS	TMEM16J CCDS - NCBI
AceView	TMEM16J AceView - NCBI
Unigene	Hs.501622 [ SRS ]    Hs.501622 [ NCBI ]
Fast-db	270 (alternative variants)
	Protein : pattern, domain, 3D structure
SwissProt	A1A5B4 [ SRS]    A1A5B4 [ EXPASY ]     A1A5B4 [ INTERPRO ]     A1A5B4 [ UNIPROT ] A1A5B4 [ VarSplice FASTA ]
Interpro	IPR007632 DUF590 [ SRS ]    IPR007632 DUF590 [ EBI ]
CluSTr	A1A5B4
Pfam	PF04547 DUF590 [ SRS ]    PF04547 DUF590 [ Sanger ]    pfam04547 [ NCBI-CDD ]
Blocks	A1A5B4
HPRD	18214
	Protein Interaction databases
DIP	A1A5B4
IntAct	A1A5B4
	Polymorphism : SNP, mutations, diseases
SNP	TMEM16J [dbSNP-NCBI]
SNP	NM_001012302 [SNP-NCI]
SNP	TMEM16J [GeneSNPs - Utah]  TMEM16J] [HGBASE - SRS]
HAPMAP	TMEM16J [HAPMAP]
COSMIC	TMEM16J [Somatic mutation (COSMIC-CGP-Sanger)]
HGMD	TMEM16J
Genetic Association	TMEM16J
CDC HuGE	TMEM16J
	General knowledge
Family Browser	TMEM16J [UCSC Family Browser]
SOURCE	NM_001012302
SMD	Hs.501622
SAGE	Hs.501622
GO	membrane [Amigo]  membrane
GO	integral to membrane [Amigo]  integral to membrane
PubGene	TMEM16J
TreeFam	TMEM16J
CTD	338440 [Comparative ToxicoGenomics Database]
	Other databases
	Probes
Probe	TMEM16J Related clones (RZPD - Berlin)
	PubMed
PubMed	5 Pubmed reference(s) in Entrez

Genes in title	automatic search in PubMed
REVIEW articles	automatic search in PubMed
Last year publications	automatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written	09-2002	Dessen P, Le Minor S
Updated	03-2008	Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : Thu Nov 27 14:16:03 2008