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TMEM17 (transmembrane protein 17)

Identity

Alias (NCBI)-
HGNC (Hugo) TMEM17
HGNC Alias symbFLJ34583
LocusID (NCBI) 200728
Atlas_Id 74832
Location 2p15  [Link to chromosome band 2p15]
Location_base_pair Starts at 62500219 and ends at 62506195 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
OXCT1 (5p13.1) / TMEM17 (2p15)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TMEM17   26623
Cards
Entrez_Gene (NCBI)TMEM17    transmembrane protein 17
Aliases
GeneCards (Weizmann)TMEM17
Ensembl hg19 (Hinxton)ENSG00000186889 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000186889 [Gene_View]  ENSG00000186889 [Sequence]  chr2:62500219-62506195 [Contig_View]  TMEM17 [Vega]
ICGC DataPortalENSG00000186889
TCGA cBioPortalTMEM17
AceView (NCBI)TMEM17
Genatlas (Paris)TMEM17
SOURCE (Princeton)TMEM17
Genetics Home Reference (NIH)TMEM17
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM17  -     chr2:62500219-62506195 -  2p15   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM17  -     2p15   [Description]    (hg19-Feb_2009)
GoldenPathTMEM17 - 2p15 [CytoView hg19]  TMEM17 - 2p15 [CytoView hg38]
ImmunoBaseENSG00000186889
Genome Data Viewer NCBITMEM17 [Mapview hg19]  
OMIM614950   
Gene and transcription
Genbank (Entrez)AK091902 AK124081 BC047439 DR760587
RefSeq transcript (Entrez)NM_198276
Consensus coding sequences : CCDS (NCBI)TMEM17
Gene ExpressionTMEM17 [ NCBI-GEO ]   TMEM17 [ EBI - ARRAY_EXPRESS ]   TMEM17 [ SEEK ]   TMEM17 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM17 [ Firebrowse - Broad ]
GenevisibleExpression of TMEM17 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)200728
GTEX Portal (Tissue expression)TMEM17
Human Protein AtlasENSG00000186889-TMEM17 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86X19   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86X19  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86X19
PhosPhoSitePlusQ86X19
Domains : Interpro (EBI)Uncharacterised_TM-17   
Domain families : Pfam (Sanger)Transmemb_17 (PF09799)   
Domain families : Pfam (NCBI)pfam09799   
Conserved Domain (NCBI)TMEM17
SuperfamilyQ86X19
AlphaFold pdb e-kbQ86X19   
Human Protein Atlas [tissue]ENSG00000186889-TMEM17 [tissue]
HPRD15528
Protein Interaction databases
DIP (DOE-UCLA)Q86X19
IntAct (EBI)Q86X19
BioGRIDTMEM17
STRING (EMBL)TMEM17
ZODIACTMEM17
Ontologies - Pathways
QuickGOQ86X19
Ontology : AmiGOprotein binding  smoothened signaling pathway  integral component of membrane  ciliary transition zone  ciliary transition zone  MKS complex  ciliary membrane  cilium assembly  non-motile cilium assembly  non-motile cilium assembly  
Ontology : EGO-EBIprotein binding  smoothened signaling pathway  integral component of membrane  ciliary transition zone  ciliary transition zone  MKS complex  ciliary membrane  cilium assembly  non-motile cilium assembly  non-motile cilium assembly  
NDEx NetworkTMEM17
Atlas of Cancer Signalling NetworkTMEM17
Wikipedia pathwaysTMEM17
Orthology - Evolution
OrthoDB200728
GeneTree (enSembl)ENSG00000186889
Phylogenetic Trees/Animal Genes : TreeFamTMEM17
Homologs : HomoloGeneTMEM17
Homology/Alignments : Family Browser (UCSC)TMEM17
Gene fusions - Rearrangements
Fusion : QuiverTMEM17
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM17 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM17
dbVarTMEM17
ClinVarTMEM17
MonarchTMEM17
1000_GenomesTMEM17 
Exome Variant ServerTMEM17
GNOMAD BrowserENSG00000186889
Varsome BrowserTMEM17
ACMGTMEM17 variants
VarityQ86X19
Genomic Variants (DGV)TMEM17 [DGVbeta]
DECIPHERTMEM17 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM17 
Mutations
ICGC Data PortalTMEM17 
TCGA Data PortalTMEM17 
Broad Tumor PortalTMEM17
OASIS PortalTMEM17 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM17  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTMEM17
Mutations and Diseases : HGMDTMEM17
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTMEM17
DgiDB (Drug Gene Interaction Database)TMEM17
DoCM (Curated mutations)TMEM17
CIViC (Clinical Interpretations of Variants in Cancer)TMEM17
Cancer3DTMEM17
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614950   
Orphanet
DisGeNETTMEM17
MedgenTMEM17
Genetic Testing Registry TMEM17
NextProtQ86X19 [Medical]
GENETestsTMEM17
Target ValidationTMEM17
Huge Navigator TMEM17 [HugePedia]
ClinGenTMEM17
Clinical trials, drugs, therapy
MyCancerGenomeTMEM17
Protein Interactions : CTDTMEM17
Pharm GKB GenePA134962933
PharosQ86X19
Clinical trialTMEM17
Miscellaneous
canSAR (ICR)TMEM17
HarmonizomeTMEM17
DataMed IndexTMEM17
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTMEM17
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:25:54 CEST 2021

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