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TMEM17 (transmembrane protein 17)

Identity

Alias_symbol (synonym)FLJ34583
Other alias-
HGNC (Hugo) TMEM17
LocusID (NCBI) 200728
Atlas_Id 74832
Location 2p15  [Link to chromosome band 2p15]
Location_base_pair Starts at 62500221 and ends at 62506469 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
OXCT1 (5p13.1) / TMEM17 (2p15)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM17   26623
Cards
Entrez_Gene (NCBI)TMEM17  200728  transmembrane protein 17
Aliases
GeneCards (Weizmann)TMEM17
Ensembl hg19 (Hinxton)ENSG00000186889 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000186889 [Gene_View]  chr2:62500221-62506469 [Contig_View]  TMEM17 [Vega]
ICGC DataPortalENSG00000186889
TCGA cBioPortalTMEM17
AceView (NCBI)TMEM17
Genatlas (Paris)TMEM17
WikiGenes200728
SOURCE (Princeton)TMEM17
Genetics Home Reference (NIH)TMEM17
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM17  -     chr2:62500221-62506469 -  2p15   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM17  -     2p15   [Description]    (hg19-Feb_2009)
EnsemblTMEM17 - 2p15 [CytoView hg19]  TMEM17 - 2p15 [CytoView hg38]
Mapping of homologs : NCBITMEM17 [Mapview hg19]  TMEM17 [Mapview hg38]
OMIM614950   
Gene and transcription
Genbank (Entrez)AK091902 AK124081 BC047439 DR760587 HQ448043
RefSeq transcript (Entrez)NM_198276
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMEM17
Cluster EST : UnigeneHs.308028 [ NCBI ]
CGAP (NCI)Hs.308028
Alternative Splicing GalleryENSG00000186889
Gene ExpressionTMEM17 [ NCBI-GEO ]   TMEM17 [ EBI - ARRAY_EXPRESS ]   TMEM17 [ SEEK ]   TMEM17 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM17 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)200728
GTEX Portal (Tissue expression)TMEM17
Human Protein AtlasENSG00000186889-TMEM17 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86X19   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86X19  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86X19
Splice isoforms : SwissVarQ86X19
PhosPhoSitePlusQ86X19
Domains : Interpro (EBI)Uncharacterised_TM-17   
Domain families : Pfam (Sanger)Transmemb_17 (PF09799)   
Domain families : Pfam (NCBI)pfam09799   
Conserved Domain (NCBI)TMEM17
DMDM Disease mutations200728
Blocks (Seattle)TMEM17
SuperfamilyQ86X19
Human Protein Atlas [tissue]ENSG00000186889-TMEM17 [tissue]
Peptide AtlasQ86X19
HPRD15528
IPIIPI00329117   
Protein Interaction databases
DIP (DOE-UCLA)Q86X19
IntAct (EBI)Q86X19
FunCoupENSG00000186889
BioGRIDTMEM17
STRING (EMBL)TMEM17
ZODIACTMEM17
Ontologies - Pathways
QuickGOQ86X19
Ontology : AmiGOsmoothened signaling pathway  integral component of membrane  ciliary transition zone  MKS complex  ciliary membrane  cilium assembly  non-motile cilium assembly  
Ontology : EGO-EBIsmoothened signaling pathway  integral component of membrane  ciliary transition zone  MKS complex  ciliary membrane  cilium assembly  non-motile cilium assembly  
NDEx NetworkTMEM17
Atlas of Cancer Signalling NetworkTMEM17
Wikipedia pathwaysTMEM17
Orthology - Evolution
OrthoDB200728
GeneTree (enSembl)ENSG00000186889
Phylogenetic Trees/Animal Genes : TreeFamTMEM17
HOVERGENQ86X19
HOGENOMQ86X19
Homologs : HomoloGeneTMEM17
Homology/Alignments : Family Browser (UCSC)TMEM17
Gene fusions - Rearrangements
Fusion: Tumor Portal TMEM17
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM17 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM17
dbVarTMEM17
ClinVarTMEM17
1000_GenomesTMEM17 
Exome Variant ServerTMEM17
ExAC (Exome Aggregation Consortium)ENSG00000186889
GNOMAD BrowserENSG00000186889
Genetic variants : HAPMAP200728
Genomic Variants (DGV)TMEM17 [DGVbeta]
DECIPHERTMEM17 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM17 
Mutations
ICGC Data PortalTMEM17 
TCGA Data PortalTMEM17 
Broad Tumor PortalTMEM17
OASIS PortalTMEM17 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM17  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM17
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM17
DgiDB (Drug Gene Interaction Database)TMEM17
DoCM (Curated mutations)TMEM17 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM17 (select a term)
intoGenTMEM17
Cancer3DTMEM17(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614950   
Orphanet
MedgenTMEM17
Genetic Testing Registry TMEM17
NextProtQ86X19 [Medical]
TSGene200728
GENETestsTMEM17
Target ValidationTMEM17
Huge Navigator TMEM17 [HugePedia]
snp3D : Map Gene to Disease200728
BioCentury BCIQTMEM17
ClinGenTMEM17
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD200728
Chemical/Pharm GKB GenePA134962933
Clinical trialTMEM17
Miscellaneous
canSAR (ICR)TMEM17 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM17
EVEXTMEM17
GoPubMedTMEM17
iHOPTMEM17
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:32:50 CET 2017

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