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TMEM170A (transmembrane protein 170A)

Identity

Alias_namesTMEM170
transmembrane protein 170
Alias_symbol (synonym)FLJ37611
Other alias
HGNC (Hugo) TMEM170A
LocusID (NCBI) 124491
Atlas_Id 74833
Location 16q23.1  [Link to chromosome band 16q23]
Location_base_pair Starts at 75443244 and ends at 75464737 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
TENM1 (Xq25) / TMEM170A (16q23.1)TMEM170A (16q23.1) / CAPN3 (15q15.1)TMEM170A (16q23.1) / TMEM170A (16q23.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM170A   29577
Cards
Entrez_Gene (NCBI)TMEM170A  124491  transmembrane protein 170A
AliasesTMEM170
GeneCards (Weizmann)TMEM170A
Ensembl hg19 (Hinxton)ENSG00000166822 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000166822 [Gene_View]  chr16:75443244-75464737 [Contig_View]  TMEM170A [Vega]
ICGC DataPortalENSG00000166822
TCGA cBioPortalTMEM170A
AceView (NCBI)TMEM170A
Genatlas (Paris)TMEM170A
WikiGenes124491
SOURCE (Princeton)TMEM170A
Genetics Home Reference (NIH)TMEM170A
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM170A  -     chr16:75443244-75464737 -  16q23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM170A  -     16q23.1   [Description]    (hg19-Feb_2009)
EnsemblTMEM170A - 16q23.1 [CytoView hg19]  TMEM170A - 16q23.1 [CytoView hg38]
Mapping of homologs : NCBITMEM170A [Mapview hg19]  TMEM170A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK094930 AK298475 AK311919 AY302139 BC018082
RefSeq transcript (Entrez)NM_001304996 NM_001304997 NM_001304998 NM_145254
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMEM170A
Cluster EST : UnigeneHs.487510 [ NCBI ]
CGAP (NCI)Hs.487510
Alternative Splicing GalleryENSG00000166822
Gene ExpressionTMEM170A [ NCBI-GEO ]   TMEM170A [ EBI - ARRAY_EXPRESS ]   TMEM170A [ SEEK ]   TMEM170A [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM170A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)124491
GTEX Portal (Tissue expression)TMEM170A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WVE7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WVE7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WVE7
Splice isoforms : SwissVarQ8WVE7
PhosPhoSitePlusQ8WVE7
Domains : Interpro (EBI)Transmembrane_pr_170   
Domain families : Pfam (Sanger)Tmemb_170 (PF10190)   
Domain families : Pfam (NCBI)pfam10190   
Conserved Domain (NCBI)TMEM170A
DMDM Disease mutations124491
Blocks (Seattle)TMEM170A
SuperfamilyQ8WVE7
Human Protein AtlasENSG00000166822
Peptide AtlasQ8WVE7
HPRD14027
IPIIPI00103109   IPI00385402   
Protein Interaction databases
DIP (DOE-UCLA)Q8WVE7
IntAct (EBI)Q8WVE7
FunCoupENSG00000166822
BioGRIDTMEM170A
STRING (EMBL)TMEM170A
ZODIACTMEM170A
Ontologies - Pathways
QuickGOQ8WVE7
Ontology : AmiGOprotein binding  nuclear envelope  endoplasmic reticulum membrane  nuclear envelope organization  integral component of membrane  nuclear pore complex assembly  endoplasmic reticulum tubular network organization  
Ontology : EGO-EBIprotein binding  nuclear envelope  endoplasmic reticulum membrane  nuclear envelope organization  integral component of membrane  nuclear pore complex assembly  endoplasmic reticulum tubular network organization  
NDEx NetworkTMEM170A
Atlas of Cancer Signalling NetworkTMEM170A
Wikipedia pathwaysTMEM170A
Orthology - Evolution
OrthoDB124491
GeneTree (enSembl)ENSG00000166822
Phylogenetic Trees/Animal Genes : TreeFamTMEM170A
HOVERGENQ8WVE7
HOGENOMQ8WVE7
Homologs : HomoloGeneTMEM170A
Homology/Alignments : Family Browser (UCSC)TMEM170A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM170A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM170A
dbVarTMEM170A
ClinVarTMEM170A
1000_GenomesTMEM170A 
Exome Variant ServerTMEM170A
ExAC (Exome Aggregation Consortium)TMEM170A (select the gene name)
Genetic variants : HAPMAP124491
Genomic Variants (DGV)TMEM170A [DGVbeta]
DECIPHERTMEM170A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM170A 
Mutations
ICGC Data PortalTMEM170A 
TCGA Data PortalTMEM170A 
Broad Tumor PortalTMEM170A
OASIS PortalTMEM170A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM170A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM170A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM170A
DgiDB (Drug Gene Interaction Database)TMEM170A
DoCM (Curated mutations)TMEM170A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM170A (select a term)
intoGenTMEM170A
Cancer3DTMEM170A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTMEM170A
Genetic Testing Registry TMEM170A
NextProtQ8WVE7 [Medical]
TSGene124491
GENETestsTMEM170A
Target ValidationTMEM170A
Huge Navigator TMEM170A [HugePedia]
snp3D : Map Gene to Disease124491
BioCentury BCIQTMEM170A
ClinGenTMEM170A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD124491
Chemical/Pharm GKB GenePA162405922
Clinical trialTMEM170A
Miscellaneous
canSAR (ICR)TMEM170A (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM170A
EVEXTMEM170A
GoPubMedTMEM170A
iHOPTMEM170A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:45:59 CEST 2017

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