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TMEM170B (transmembrane protein 170B)

Identity

Other alias-
HGNC (Hugo) TMEM170B
LocusID (NCBI) 100113407
Atlas_Id 74834
Location 6p24.2  [Link to chromosome band 6p24]
Location_base_pair Starts at 11538227 and ends at 11583524 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM170B   34244
Cards
Entrez_Gene (NCBI)TMEM170B  100113407  transmembrane protein 170B
Aliases
GeneCards (Weizmann)TMEM170B
Ensembl hg19 (Hinxton)ENSG00000205269 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000205269 [Gene_View]  ENSG00000205269 [Sequence]  chr6:11538227-11583524 [Contig_View]  TMEM170B [Vega]
ICGC DataPortalENSG00000205269
TCGA cBioPortalTMEM170B
AceView (NCBI)TMEM170B
Genatlas (Paris)TMEM170B
WikiGenes100113407
SOURCE (Princeton)TMEM170B
Genetics Home Reference (NIH)TMEM170B
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM170B  -     chr6:11538227-11583524 +  6p24.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM170B  -     6p24.2   [Description]    (hg19-Feb_2009)
EnsemblTMEM170B - 6p24.2 [CytoView hg19]  TMEM170B - 6p24.2 [CytoView hg38]
Mapping of homologs : NCBITMEM170B [Mapview hg19]  TMEM170B [Mapview hg38]
Gene and transcription
Genbank (Entrez)BE670213 DB092520
RefSeq transcript (Entrez)NM_001100829
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMEM170B
Cluster EST : UnigeneHs.146317 [ NCBI ]
CGAP (NCI)Hs.146317
Alternative Splicing GalleryENSG00000205269
Gene ExpressionTMEM170B [ NCBI-GEO ]   TMEM170B [ EBI - ARRAY_EXPRESS ]   TMEM170B [ SEEK ]   TMEM170B [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM170B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100113407
GTEX Portal (Tissue expression)TMEM170B
Human Protein AtlasENSG00000205269-TMEM170B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T4T1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T4T1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T4T1
Splice isoforms : SwissVarQ5T4T1
PhosPhoSitePlusQ5T4T1
Domains : Interpro (EBI)Transmembrane_pr_170   
Domain families : Pfam (Sanger)Tmemb_170 (PF10190)   
Domain families : Pfam (NCBI)pfam10190   
Conserved Domain (NCBI)TMEM170B
DMDM Disease mutations100113407
Blocks (Seattle)TMEM170B
SuperfamilyQ5T4T1
Human Protein Atlas [tissue]ENSG00000205269-TMEM170B [tissue]
Peptide AtlasQ5T4T1
IPIIPI00514739   
Protein Interaction databases
DIP (DOE-UCLA)Q5T4T1
IntAct (EBI)Q5T4T1
FunCoupENSG00000205269
BioGRIDTMEM170B
STRING (EMBL)TMEM170B
ZODIACTMEM170B
Ontologies - Pathways
QuickGOQ5T4T1
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkTMEM170B
Atlas of Cancer Signalling NetworkTMEM170B
Wikipedia pathwaysTMEM170B
Orthology - Evolution
OrthoDB100113407
GeneTree (enSembl)ENSG00000205269
Phylogenetic Trees/Animal Genes : TreeFamTMEM170B
HOVERGENQ5T4T1
HOGENOMQ5T4T1
Homologs : HomoloGeneTMEM170B
Homology/Alignments : Family Browser (UCSC)TMEM170B
Gene fusions - Rearrangements
Fusion : QuiverTMEM170B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM170B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM170B
dbVarTMEM170B
ClinVarTMEM170B
1000_GenomesTMEM170B 
Exome Variant ServerTMEM170B
ExAC (Exome Aggregation Consortium)ENSG00000205269
GNOMAD BrowserENSG00000205269
Varsome BrowserTMEM170B
Genetic variants : HAPMAP100113407
Genomic Variants (DGV)TMEM170B [DGVbeta]
DECIPHERTMEM170B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM170B 
Mutations
ICGC Data PortalTMEM170B 
TCGA Data PortalTMEM170B 
Broad Tumor PortalTMEM170B
OASIS PortalTMEM170B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM170B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM170B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM170B
DgiDB (Drug Gene Interaction Database)TMEM170B
DoCM (Curated mutations)TMEM170B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM170B (select a term)
intoGenTMEM170B
Cancer3DTMEM170B(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTMEM170B
MedgenTMEM170B
Genetic Testing Registry TMEM170B
NextProtQ5T4T1 [Medical]
TSGene100113407
GENETestsTMEM170B
Target ValidationTMEM170B
Huge Navigator TMEM170B [HugePedia]
snp3D : Map Gene to Disease100113407
BioCentury BCIQTMEM170B
ClinGenTMEM170B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100113407
Chemical/Pharm GKB GenePA162405923
Clinical trialTMEM170B
Miscellaneous
canSAR (ICR)TMEM170B (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM170B
EVEXTMEM170B
GoPubMedTMEM170B
iHOPTMEM170B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 14:35:22 CEST 2018

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