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TMEM171 (transmembrane protein 171)

Identity

Alias (NCBI)PRP2
HGNC (Hugo) TMEM171
HGNC Alias symbPRP2
LocusID (NCBI) 134285
Atlas_Id 74835
Location 5q13.2  [Link to chromosome band 5q13]
Location_base_pair Starts at 73120575 and ends at 73131809 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TMEM171   27031
Cards
Entrez_Gene (NCBI)TMEM171    transmembrane protein 171
AliasesPRP2
GeneCards (Weizmann)TMEM171
Ensembl hg19 (Hinxton)ENSG00000157111 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000157111 [Gene_View]  ENSG00000157111 [Sequence]  chr5:73120575-73131809 [Contig_View]  TMEM171 [Vega]
ICGC DataPortalENSG00000157111
TCGA cBioPortalTMEM171
AceView (NCBI)TMEM171
Genatlas (Paris)TMEM171
SOURCE (Princeton)TMEM171
Genetics Home Reference (NIH)TMEM171
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM171  -     chr5:73120575-73131809 +  5q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM171  -     5q13.2   [Description]    (hg19-Feb_2009)
GoldenPathTMEM171 - 5q13.2 [CytoView hg19]  TMEM171 - 5q13.2 [CytoView hg38]
ImmunoBaseENSG00000157111
Genome Data Viewer NCBITMEM171 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)BC018083 BC035310 CN261444 DB334050
RefSeq transcript (Entrez)NM_001161342 NM_173490
Consensus coding sequences : CCDS (NCBI)TMEM171
Gene ExpressionTMEM171 [ NCBI-GEO ]   TMEM171 [ EBI - ARRAY_EXPRESS ]   TMEM171 [ SEEK ]   TMEM171 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM171 [ Firebrowse - Broad ]
GenevisibleExpression of TMEM171 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)134285
GTEX Portal (Tissue expression)TMEM171
Human Protein AtlasENSG00000157111-TMEM171 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WVE6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WVE6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WVE6
PhosPhoSitePlusQ8WVE6
Domains : Interpro (EBI)TMEM171   
Domain families : Pfam (Sanger)TMEM171 (PF15471)   
Domain families : Pfam (NCBI)pfam15471   
Conserved Domain (NCBI)TMEM171
SuperfamilyQ8WVE6
AlphaFold pdb e-kbQ8WVE6   
Human Protein Atlas [tissue]ENSG00000157111-TMEM171 [tissue]
HPRD14057
Protein Interaction databases
DIP (DOE-UCLA)Q8WVE6
IntAct (EBI)Q8WVE6
BioGRIDTMEM171
STRING (EMBL)TMEM171
ZODIACTMEM171
Ontologies - Pathways
QuickGOQ8WVE6
Ontology : AmiGOprotein binding  integral component of membrane  
Ontology : EGO-EBIprotein binding  integral component of membrane  
NDEx NetworkTMEM171
Atlas of Cancer Signalling NetworkTMEM171
Wikipedia pathwaysTMEM171
Orthology - Evolution
OrthoDB134285
GeneTree (enSembl)ENSG00000157111
Phylogenetic Trees/Animal Genes : TreeFamTMEM171
Homologs : HomoloGeneTMEM171
Homology/Alignments : Family Browser (UCSC)TMEM171
Gene fusions - Rearrangements
Fusion : QuiverTMEM171
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM171 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM171
dbVarTMEM171
ClinVarTMEM171
MonarchTMEM171
1000_GenomesTMEM171 
Exome Variant ServerTMEM171
GNOMAD BrowserENSG00000157111
Varsome BrowserTMEM171
ACMGTMEM171 variants
VarityQ8WVE6
Genomic Variants (DGV)TMEM171 [DGVbeta]
DECIPHERTMEM171 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM171 
Mutations
ICGC Data PortalTMEM171 
TCGA Data PortalTMEM171 
Broad Tumor PortalTMEM171
OASIS PortalTMEM171 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM171  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTMEM171
Mutations and Diseases : HGMDTMEM171
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTMEM171
DgiDB (Drug Gene Interaction Database)TMEM171
DoCM (Curated mutations)TMEM171
CIViC (Clinical Interpretations of Variants in Cancer)TMEM171
Cancer3DTMEM171
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTMEM171
MedgenTMEM171
Genetic Testing Registry TMEM171
NextProtQ8WVE6 [Medical]
GENETestsTMEM171
Target ValidationTMEM171
Huge Navigator TMEM171 [HugePedia]
ClinGenTMEM171
Clinical trials, drugs, therapy
MyCancerGenomeTMEM171
Protein Interactions : CTDTMEM171
Pharm GKB GenePA162405933
PharosQ8WVE6
Clinical trialTMEM171
Miscellaneous
canSAR (ICR)TMEM171
HarmonizomeTMEM171
DataMed IndexTMEM171
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTMEM171
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:25:54 CEST 2021

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