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TMEM171 (transmembrane protein 171)

Identity

Alias_symbol (synonym)PRP2
Other alias
HGNC (Hugo) TMEM171
LocusID (NCBI) 134285
Atlas_Id 74835
Location 5q13.2  [Link to chromosome band 5q13]
Location_base_pair Starts at 73120561 and ends at 73131817 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM171   27031
Cards
Entrez_Gene (NCBI)TMEM171  134285  transmembrane protein 171
AliasesPRP2
GeneCards (Weizmann)TMEM171
Ensembl hg19 (Hinxton)ENSG00000157111 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000157111 [Gene_View]  chr5:73120561-73131817 [Contig_View]  TMEM171 [Vega]
ICGC DataPortalENSG00000157111
TCGA cBioPortalTMEM171
AceView (NCBI)TMEM171
Genatlas (Paris)TMEM171
WikiGenes134285
SOURCE (Princeton)TMEM171
Genetics Home Reference (NIH)TMEM171
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM171  -     chr5:73120561-73131817 +  5q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM171  -     5q13.2   [Description]    (hg19-Feb_2009)
EnsemblTMEM171 - 5q13.2 [CytoView hg19]  TMEM171 - 5q13.2 [CytoView hg38]
Mapping of homologs : NCBITMEM171 [Mapview hg19]  TMEM171 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC018083 BC035310 CN261444 DB334050 HQ448012
RefSeq transcript (Entrez)NM_001161342 NM_173490
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMEM171
Cluster EST : UnigeneHs.162246 [ NCBI ]
CGAP (NCI)Hs.162246
Alternative Splicing GalleryENSG00000157111
Gene ExpressionTMEM171 [ NCBI-GEO ]   TMEM171 [ EBI - ARRAY_EXPRESS ]   TMEM171 [ SEEK ]   TMEM171 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM171 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)134285
GTEX Portal (Tissue expression)TMEM171
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WVE6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WVE6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WVE6
Splice isoforms : SwissVarQ8WVE6
PhosPhoSitePlusQ8WVE6
Domains : Interpro (EBI)TMEM171   
Domain families : Pfam (Sanger)TMEM171 (PF15471)   
Domain families : Pfam (NCBI)pfam15471   
Conserved Domain (NCBI)TMEM171
DMDM Disease mutations134285
Blocks (Seattle)TMEM171
SuperfamilyQ8WVE6
Human Protein AtlasENSG00000157111
Peptide AtlasQ8WVE6
HPRD14057
IPIIPI00291434   IPI00787817   
Protein Interaction databases
DIP (DOE-UCLA)Q8WVE6
IntAct (EBI)Q8WVE6
FunCoupENSG00000157111
BioGRIDTMEM171
STRING (EMBL)TMEM171
ZODIACTMEM171
Ontologies - Pathways
QuickGOQ8WVE6
Ontology : AmiGOprotein binding  integral component of membrane  
Ontology : EGO-EBIprotein binding  integral component of membrane  
NDEx NetworkTMEM171
Atlas of Cancer Signalling NetworkTMEM171
Wikipedia pathwaysTMEM171
Orthology - Evolution
OrthoDB134285
GeneTree (enSembl)ENSG00000157111
Phylogenetic Trees/Animal Genes : TreeFamTMEM171
HOVERGENQ8WVE6
HOGENOMQ8WVE6
Homologs : HomoloGeneTMEM171
Homology/Alignments : Family Browser (UCSC)TMEM171
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM171 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM171
dbVarTMEM171
ClinVarTMEM171
1000_GenomesTMEM171 
Exome Variant ServerTMEM171
ExAC (Exome Aggregation Consortium)TMEM171 (select the gene name)
Genetic variants : HAPMAP134285
Genomic Variants (DGV)TMEM171 [DGVbeta]
DECIPHERTMEM171 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM171 
Mutations
ICGC Data PortalTMEM171 
TCGA Data PortalTMEM171 
Broad Tumor PortalTMEM171
OASIS PortalTMEM171 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM171  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM171
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM171
DgiDB (Drug Gene Interaction Database)TMEM171
DoCM (Curated mutations)TMEM171 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM171 (select a term)
intoGenTMEM171
Cancer3DTMEM171(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTMEM171
Genetic Testing Registry TMEM171
NextProtQ8WVE6 [Medical]
TSGene134285
GENETestsTMEM171
Target ValidationTMEM171
Huge Navigator TMEM171 [HugePedia]
snp3D : Map Gene to Disease134285
BioCentury BCIQTMEM171
ClinGenTMEM171
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD134285
Chemical/Pharm GKB GenePA162405933
Clinical trialTMEM171
Miscellaneous
canSAR (ICR)TMEM171 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM171
EVEXTMEM171
GoPubMedTMEM171
iHOPTMEM171
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:41:45 CEST 2017

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