Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TMEM175 (transmembrane protein 175)

Identity

Alias_symbol (synonym)MGC4618
Other aliashTMEM175
HGNC (Hugo) TMEM175
LocusID (NCBI) 84286
Atlas_Id 56000
Location 4p16.3  [Link to chromosome band 4p16]
Location_base_pair Starts at 932387 and ends at 958655 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
BAG6 (6p21.33) / TMEM175 (4p16.3)TMEM175 (4p16.3) / BAG6 (6p21.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM175   28709
Cards
Entrez_Gene (NCBI)TMEM175  84286  transmembrane protein 175
AliaseshTMEM175
GeneCards (Weizmann)TMEM175
Ensembl hg19 (Hinxton)ENSG00000127419 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000127419 [Gene_View]  chr4:932387-958655 [Contig_View]  TMEM175 [Vega]
ICGC DataPortalENSG00000127419
TCGA cBioPortalTMEM175
AceView (NCBI)TMEM175
Genatlas (Paris)TMEM175
WikiGenes84286
SOURCE (Princeton)TMEM175
Genetics Home Reference (NIH)TMEM175
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM175  -     chr4:932387-958655 +  4p16.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM175  -     4p16.3   [Description]    (hg19-Feb_2009)
EnsemblTMEM175 - 4p16.3 [CytoView hg19]  TMEM175 - 4p16.3 [CytoView hg38]
Mapping of homologs : NCBITMEM175 [Mapview hg19]  TMEM175 [Mapview hg38]
OMIM616660   
Gene and transcription
Genbank (Entrez)AK090848 AK293641 AK309132 AL834199 BC005158
RefSeq transcript (Entrez)NM_001297423 NM_001297424 NM_001297425 NM_001297426 NM_001297427 NM_001297428 NM_032326
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMEM175
Cluster EST : UnigeneHs.478936 [ NCBI ]
CGAP (NCI)Hs.478936
Alternative Splicing GalleryENSG00000127419
Gene ExpressionTMEM175 [ NCBI-GEO ]   TMEM175 [ EBI - ARRAY_EXPRESS ]   TMEM175 [ SEEK ]   TMEM175 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM175 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84286
GTEX Portal (Tissue expression)TMEM175
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BSA9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BSA9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BSA9
Splice isoforms : SwissVarQ9BSA9
PhosPhoSitePlusQ9BSA9
Domains : Interpro (EBI)TMEM175   
Domain families : Pfam (Sanger)DUF1211 (PF06736)   
Domain families : Pfam (NCBI)pfam06736   
Conserved Domain (NCBI)TMEM175
DMDM Disease mutations84286
Blocks (Seattle)TMEM175
SuperfamilyQ9BSA9
Human Protein AtlasENSG00000127419
Peptide AtlasQ9BSA9
HPRD14648
IPIIPI00031572   IPI00844314   IPI00902853   IPI00966873   IPI00966874   IPI00965430   IPI00966248   IPI00964471   IPI00965492   IPI00967148   IPI00964110   IPI00965532   IPI00965221   
Protein Interaction databases
DIP (DOE-UCLA)Q9BSA9
IntAct (EBI)Q9BSA9
FunCoupENSG00000127419
BioGRIDTMEM175
STRING (EMBL)TMEM175
ZODIACTMEM175
Ontologies - Pathways
QuickGOQ9BSA9
Ontology : AmiGOlysosome  lysosomal membrane  endosome  endosome membrane  integral component of membrane  potassium ion leak channel activity  regulation of lysosomal lumen pH  potassium ion transmembrane transport  phagosome-lysosome fusion  
Ontology : EGO-EBIlysosome  lysosomal membrane  endosome  endosome membrane  integral component of membrane  potassium ion leak channel activity  regulation of lysosomal lumen pH  potassium ion transmembrane transport  phagosome-lysosome fusion  
NDEx NetworkTMEM175
Atlas of Cancer Signalling NetworkTMEM175
Wikipedia pathwaysTMEM175
Orthology - Evolution
OrthoDB84286
GeneTree (enSembl)ENSG00000127419
Phylogenetic Trees/Animal Genes : TreeFamTMEM175
HOVERGENQ9BSA9
HOGENOMQ9BSA9
Homologs : HomoloGeneTMEM175
Homology/Alignments : Family Browser (UCSC)TMEM175
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM175 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM175
dbVarTMEM175
ClinVarTMEM175
1000_GenomesTMEM175 
Exome Variant ServerTMEM175
ExAC (Exome Aggregation Consortium)TMEM175 (select the gene name)
Genetic variants : HAPMAP84286
Genomic Variants (DGV)TMEM175 [DGVbeta]
DECIPHERTMEM175 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM175 
Mutations
ICGC Data PortalTMEM175 
TCGA Data PortalTMEM175 
Broad Tumor PortalTMEM175
OASIS PortalTMEM175 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM175  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM175
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM175
DgiDB (Drug Gene Interaction Database)TMEM175
DoCM (Curated mutations)TMEM175 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM175 (select a term)
intoGenTMEM175
Cancer3DTMEM175(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616660   
Orphanet
MedgenTMEM175
Genetic Testing Registry TMEM175
NextProtQ9BSA9 [Medical]
TSGene84286
GENETestsTMEM175
Target ValidationTMEM175
Huge Navigator TMEM175 [HugePedia]
snp3D : Map Gene to Disease84286
BioCentury BCIQTMEM175
ClinGenTMEM175
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84286
Chemical/Pharm GKB GenePA162405946
Clinical trialTMEM175
Miscellaneous
canSAR (ICR)TMEM175 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM175
EVEXTMEM175
GoPubMedTMEM175
iHOPTMEM175
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 1 17:17:06 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.