Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TMEM176A (transmembrane protein 176A)

Identity

Alias_symbol (synonym)HCA112
MS4B1
Other aliasGS188
HGNC (Hugo) TMEM176A
LocusID (NCBI) 55365
Atlas_Id 40792
Location 7q36.1  [Link to chromosome band 7q36]
Location_base_pair Starts at 150800766 and ends at 150805120 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
TMEM176A (7q36.1) / ZNF407 (18q22.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM176A   24930
Cards
Entrez_Gene (NCBI)TMEM176A  55365  transmembrane protein 176A
AliasesGS188; HCA112; MS4B1
GeneCards (Weizmann)TMEM176A
Ensembl hg19 (Hinxton)ENSG00000002933 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000002933 [Gene_View]  chr7:150800766-150805120 [Contig_View]  TMEM176A [Vega]
ICGC DataPortalENSG00000002933
TCGA cBioPortalTMEM176A
AceView (NCBI)TMEM176A
Genatlas (Paris)TMEM176A
WikiGenes55365
SOURCE (Princeton)TMEM176A
Genetics Home Reference (NIH)TMEM176A
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM176A  -     chr7:150800766-150805120 +  7q36.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM176A  -     7q36.1   [Description]    (hg19-Feb_2009)
EnsemblTMEM176A - 7q36.1 [CytoView hg19]  TMEM176A - 7q36.1 [CytoView hg38]
Mapping of homologs : NCBITMEM176A [Mapview hg19]  TMEM176A [Mapview hg38]
OMIM610334   
Gene and transcription
Genbank (Entrez)AF258340 AK123468 BC008303 BM663079
RefSeq transcript (Entrez)NM_018487
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMEM176A
Cluster EST : UnigeneHs.647116 [ NCBI ]
CGAP (NCI)Hs.647116
Alternative Splicing GalleryENSG00000002933
Gene ExpressionTMEM176A [ NCBI-GEO ]   TMEM176A [ EBI - ARRAY_EXPRESS ]   TMEM176A [ SEEK ]   TMEM176A [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM176A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55365
GTEX Portal (Tissue expression)TMEM176A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96HP8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96HP8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96HP8
Splice isoforms : SwissVarQ96HP8
PhosPhoSitePlusQ96HP8
Domains : Interpro (EBI)CD20-like    TMEM176A/TMEM176B   
Domain families : Pfam (Sanger)CD20 (PF04103)   
Domain families : Pfam (NCBI)pfam04103   
Conserved Domain (NCBI)TMEM176A
DMDM Disease mutations55365
Blocks (Seattle)TMEM176A
SuperfamilyQ96HP8
Human Protein AtlasENSG00000002933
Peptide AtlasQ96HP8
HPRD13635
IPIIPI00305912   IPI00945983   IPI00944959   IPI00945414   
Protein Interaction databases
DIP (DOE-UCLA)Q96HP8
IntAct (EBI)Q96HP8
FunCoupENSG00000002933
BioGRIDTMEM176A
STRING (EMBL)TMEM176A
ZODIACTMEM176A
Ontologies - Pathways
QuickGOQ96HP8
Ontology : AmiGOintegral component of membrane  negative regulation of dendritic cell differentiation  
Ontology : EGO-EBIintegral component of membrane  negative regulation of dendritic cell differentiation  
NDEx NetworkTMEM176A
Atlas of Cancer Signalling NetworkTMEM176A
Wikipedia pathwaysTMEM176A
Orthology - Evolution
OrthoDB55365
GeneTree (enSembl)ENSG00000002933
Phylogenetic Trees/Animal Genes : TreeFamTMEM176A
HOVERGENQ96HP8
HOGENOMQ96HP8
Homologs : HomoloGeneTMEM176A
Homology/Alignments : Family Browser (UCSC)TMEM176A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM176A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM176A
dbVarTMEM176A
ClinVarTMEM176A
1000_GenomesTMEM176A 
Exome Variant ServerTMEM176A
ExAC (Exome Aggregation Consortium)TMEM176A (select the gene name)
Genetic variants : HAPMAP55365
Genomic Variants (DGV)TMEM176A [DGVbeta]
DECIPHERTMEM176A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM176A 
Mutations
ICGC Data PortalTMEM176A 
TCGA Data PortalTMEM176A 
Broad Tumor PortalTMEM176A
OASIS PortalTMEM176A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM176A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM176A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM176A
DgiDB (Drug Gene Interaction Database)TMEM176A
DoCM (Curated mutations)TMEM176A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM176A (select a term)
intoGenTMEM176A
Cancer3DTMEM176A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610334   
Orphanet
MedgenTMEM176A
Genetic Testing Registry TMEM176A
NextProtQ96HP8 [Medical]
TSGene55365
GENETestsTMEM176A
Huge Navigator TMEM176A [HugePedia]
snp3D : Map Gene to Disease55365
BioCentury BCIQTMEM176A
ClinGenTMEM176A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55365
Chemical/Pharm GKB GenePA162405947
Clinical trialTMEM176A
Miscellaneous
canSAR (ICR)TMEM176A (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM176A
EVEXTMEM176A
GoPubMedTMEM176A
iHOPTMEM176A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 12:41:19 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.