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TMEM176A (transmembrane protein 176A)

Identity

Alias (NCBI)GS188
HCA112
MS4B1
HGNC (Hugo) TMEM176A
HGNC Alias symbHCA112
MS4B1
LocusID (NCBI) 55365
Atlas_Id 40792
Location 7q36.1  [Link to chromosome band 7q36]
Location_base_pair Starts at 150800769 and ends at 150805118 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TMEM176A (7q36.1) / ZNF407 (18q22.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TMEM176A   24930
Cards
Entrez_Gene (NCBI)TMEM176A    transmembrane protein 176A
AliasesGS188; HCA112; MS4B1
GeneCards (Weizmann)TMEM176A
Ensembl hg19 (Hinxton)ENSG00000002933 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000002933 [Gene_View]  ENSG00000002933 [Sequence]  chr7:150800769-150805118 [Contig_View]  TMEM176A [Vega]
ICGC DataPortalENSG00000002933
TCGA cBioPortalTMEM176A
AceView (NCBI)TMEM176A
Genatlas (Paris)TMEM176A
SOURCE (Princeton)TMEM176A
Genetics Home Reference (NIH)TMEM176A
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM176A  -     chr7:150800769-150805118 +  7q36.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM176A  -     7q36.1   [Description]    (hg19-Feb_2009)
GoldenPathTMEM176A - 7q36.1 [CytoView hg19]  TMEM176A - 7q36.1 [CytoView hg38]
ImmunoBaseENSG00000002933
Genome Data Viewer NCBITMEM176A [Mapview hg19]  
OMIM610334   
Gene and transcription
Genbank (Entrez)AF258340 AK123468 BC008303 BM663079
RefSeq transcript (Entrez)NM_018487
Consensus coding sequences : CCDS (NCBI)TMEM176A
Gene ExpressionTMEM176A [ NCBI-GEO ]   TMEM176A [ EBI - ARRAY_EXPRESS ]   TMEM176A [ SEEK ]   TMEM176A [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM176A [ Firebrowse - Broad ]
GenevisibleExpression of TMEM176A in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55365
GTEX Portal (Tissue expression)TMEM176A
Human Protein AtlasENSG00000002933-TMEM176A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96HP8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96HP8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96HP8
PhosPhoSitePlusQ96HP8
Domains : Interpro (EBI)CD20-like    TMEM176A/TMEM176B   
Domain families : Pfam (Sanger)CD20 (PF04103)   
Domain families : Pfam (NCBI)pfam04103   
Conserved Domain (NCBI)TMEM176A
SuperfamilyQ96HP8
AlphaFold pdb e-kbQ96HP8   
Human Protein Atlas [tissue]ENSG00000002933-TMEM176A [tissue]
HPRD13635
Protein Interaction databases
DIP (DOE-UCLA)Q96HP8
IntAct (EBI)Q96HP8
BioGRIDTMEM176A
STRING (EMBL)TMEM176A
ZODIACTMEM176A
Ontologies - Pathways
QuickGOQ96HP8
Ontology : AmiGOprotein binding  integral component of membrane  negative regulation of dendritic cell differentiation  
Ontology : EGO-EBIprotein binding  integral component of membrane  negative regulation of dendritic cell differentiation  
NDEx NetworkTMEM176A
Atlas of Cancer Signalling NetworkTMEM176A
Wikipedia pathwaysTMEM176A
Orthology - Evolution
OrthoDB55365
GeneTree (enSembl)ENSG00000002933
Phylogenetic Trees/Animal Genes : TreeFamTMEM176A
Homologs : HomoloGeneTMEM176A
Homology/Alignments : Family Browser (UCSC)TMEM176A
Gene fusions - Rearrangements
Fusion : QuiverTMEM176A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM176A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM176A
dbVarTMEM176A
ClinVarTMEM176A
MonarchTMEM176A
1000_GenomesTMEM176A 
Exome Variant ServerTMEM176A
GNOMAD BrowserENSG00000002933
Varsome BrowserTMEM176A
ACMGTMEM176A variants
VarityQ96HP8
Genomic Variants (DGV)TMEM176A [DGVbeta]
DECIPHERTMEM176A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM176A 
Mutations
ICGC Data PortalTMEM176A 
TCGA Data PortalTMEM176A 
Broad Tumor PortalTMEM176A
OASIS PortalTMEM176A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM176A  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTMEM176A
Mutations and Diseases : HGMDTMEM176A
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTMEM176A
DgiDB (Drug Gene Interaction Database)TMEM176A
DoCM (Curated mutations)TMEM176A
CIViC (Clinical Interpretations of Variants in Cancer)TMEM176A
Cancer3DTMEM176A
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610334   
Orphanet
DisGeNETTMEM176A
MedgenTMEM176A
Genetic Testing Registry TMEM176A
NextProtQ96HP8 [Medical]
GENETestsTMEM176A
Target ValidationTMEM176A
Huge Navigator TMEM176A [HugePedia]
ClinGenTMEM176A
Clinical trials, drugs, therapy
MyCancerGenomeTMEM176A
Protein Interactions : CTDTMEM176A
Pharm GKB GenePA162405947
PharosQ96HP8
Clinical trialTMEM176A
Miscellaneous
canSAR (ICR)TMEM176A
HarmonizomeTMEM176A
DataMed IndexTMEM176A
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTMEM176A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:35:27 CEST 2021

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