Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TMEM177 (transmembrane protein 177)

Identity

Alias_symbol (synonym)MGC10993
Other alias-
HGNC (Hugo) TMEM177
LocusID (NCBI) 80775
Atlas_Id 74838
Location 2q14.2  [Link to chromosome band 2q14]
Location_base_pair Starts at 119679167 and ends at 119682118 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ADRBK1 (11q13.2) / TMEM177 (2q14.2)TMEM177 (2q14.2) / ERBB2 (17q12)TMEM177 (2q14.2) / FAM153B (5q35.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM177   28143
Cards
Entrez_Gene (NCBI)TMEM177  80775  transmembrane protein 177
Aliases
GeneCards (Weizmann)TMEM177
Ensembl hg19 (Hinxton)ENSG00000144120 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000144120 [Gene_View]  chr2:119679167-119682118 [Contig_View]  TMEM177 [Vega]
ICGC DataPortalENSG00000144120
TCGA cBioPortalTMEM177
AceView (NCBI)TMEM177
Genatlas (Paris)TMEM177
WikiGenes80775
SOURCE (Princeton)TMEM177
Genetics Home Reference (NIH)TMEM177
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM177  -     chr2:119679167-119682118 +  2q14.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM177  -     2q14.2   [Description]    (hg19-Feb_2009)
EnsemblTMEM177 - 2q14.2 [CytoView hg19]  TMEM177 - 2q14.2 [CytoView hg38]
Mapping of homologs : NCBITMEM177 [Mapview hg19]  TMEM177 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA243057 AK096890 AK130088 AK299078 AK308503
RefSeq transcript (Entrez)NM_001105198 NM_001105199 NM_030577
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMEM177
Cluster EST : UnigeneHs.439991 [ NCBI ]
CGAP (NCI)Hs.439991
Alternative Splicing GalleryENSG00000144120
Gene ExpressionTMEM177 [ NCBI-GEO ]   TMEM177 [ EBI - ARRAY_EXPRESS ]   TMEM177 [ SEEK ]   TMEM177 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM177 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80775
GTEX Portal (Tissue expression)TMEM177
Human Protein AtlasENSG00000144120-TMEM177 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ53S58   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ53S58  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ53S58
Splice isoforms : SwissVarQ53S58
PhosPhoSitePlusQ53S58
Domains : Interpro (EBI)TMEM177   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TMEM177
DMDM Disease mutations80775
Blocks (Seattle)TMEM177
SuperfamilyQ53S58
Human Protein Atlas [tissue]ENSG00000144120-TMEM177 [tissue]
Peptide AtlasQ53S58
HPRD14409
IPIIPI00012251   IPI00908309   IPI00917277   
Protein Interaction databases
DIP (DOE-UCLA)Q53S58
IntAct (EBI)Q53S58
FunCoupENSG00000144120
BioGRIDTMEM177
STRING (EMBL)TMEM177
ZODIACTMEM177
Ontologies - Pathways
QuickGOQ53S58
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkTMEM177
Atlas of Cancer Signalling NetworkTMEM177
Wikipedia pathwaysTMEM177
Orthology - Evolution
OrthoDB80775
GeneTree (enSembl)ENSG00000144120
Phylogenetic Trees/Animal Genes : TreeFamTMEM177
HOVERGENQ53S58
HOGENOMQ53S58
Homologs : HomoloGeneTMEM177
Homology/Alignments : Family Browser (UCSC)TMEM177
Gene fusions - Rearrangements
Tumor Fusion PortalTMEM177
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM177 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM177
dbVarTMEM177
ClinVarTMEM177
1000_GenomesTMEM177 
Exome Variant ServerTMEM177
ExAC (Exome Aggregation Consortium)ENSG00000144120
GNOMAD BrowserENSG00000144120
Genetic variants : HAPMAP80775
Genomic Variants (DGV)TMEM177 [DGVbeta]
DECIPHERTMEM177 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM177 
Mutations
ICGC Data PortalTMEM177 
TCGA Data PortalTMEM177 
Broad Tumor PortalTMEM177
OASIS PortalTMEM177 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM177  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM177
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM177
DgiDB (Drug Gene Interaction Database)TMEM177
DoCM (Curated mutations)TMEM177 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM177 (select a term)
intoGenTMEM177
Cancer3DTMEM177(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTMEM177
MedgenTMEM177
Genetic Testing Registry TMEM177
NextProtQ53S58 [Medical]
TSGene80775
GENETestsTMEM177
Target ValidationTMEM177
Huge Navigator TMEM177 [HugePedia]
snp3D : Map Gene to Disease80775
BioCentury BCIQTMEM177
ClinGenTMEM177
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80775
Chemical/Pharm GKB GenePA162405985
Clinical trialTMEM177
Miscellaneous
canSAR (ICR)TMEM177 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM177
EVEXTMEM177
GoPubMedTMEM177
iHOPTMEM177
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:06:38 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.