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TMEM178A (transmembrane protein 178A)

Identity

Alias_namesTMEM178
transmembrane protein 178
Alias_symbol (synonym)MGC33926
Other alias
HGNC (Hugo) TMEM178A
LocusID (NCBI) 130733
Atlas_Id 74839
Location 2p22.1  [Link to chromosome band 2p22]
Location_base_pair Starts at 39665498 and ends at 39717963 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
MAP4K3 (2p22.1) / TMEM178A (2p22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM178A   28517
Cards
Entrez_Gene (NCBI)TMEM178A  130733  transmembrane protein 178A
AliasesTMEM178
GeneCards (Weizmann)TMEM178A
Ensembl hg19 (Hinxton)ENSG00000152154 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000152154 [Gene_View]  chr2:39665498-39717963 [Contig_View]  TMEM178A [Vega]
ICGC DataPortalENSG00000152154
TCGA cBioPortalTMEM178A
AceView (NCBI)TMEM178A
Genatlas (Paris)TMEM178A
WikiGenes130733
SOURCE (Princeton)TMEM178A
Genetics Home Reference (NIH)TMEM178A
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM178A  -     chr2:39665498-39717963 +  2p22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM178A  -     2p22.1   [Description]    (hg19-Feb_2009)
EnsemblTMEM178A - 2p22.1 [CytoView hg19]  TMEM178A - 2p22.1 [CytoView hg38]
Mapping of homologs : NCBITMEM178A [Mapview hg19]  TMEM178A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK075440 AY358773 BC029530 BI757636 DA062982
RefSeq transcript (Entrez)NM_001167959 NM_152390
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMEM178A
Cluster EST : UnigeneHs.40808 [ NCBI ]
CGAP (NCI)Hs.40808
Alternative Splicing GalleryENSG00000152154
Gene ExpressionTMEM178A [ NCBI-GEO ]   TMEM178A [ EBI - ARRAY_EXPRESS ]   TMEM178A [ SEEK ]   TMEM178A [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM178A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)130733
GTEX Portal (Tissue expression)TMEM178A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NBL3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NBL3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NBL3
Splice isoforms : SwissVarQ8NBL3
PhosPhoSitePlusQ8NBL3
Domains : Interpro (EBI)PMP22/EMP/MP20/Claudin   
Domain families : Pfam (Sanger)Claudin_2 (PF13903)   
Domain families : Pfam (NCBI)pfam13903   
Conserved Domain (NCBI)TMEM178A
DMDM Disease mutations130733
Blocks (Seattle)TMEM178A
SuperfamilyQ8NBL3
Human Protein AtlasENSG00000152154
Peptide AtlasQ8NBL3
HPRD14577
IPIIPI00167043   IPI00432257   IPI00954583   
Protein Interaction databases
DIP (DOE-UCLA)Q8NBL3
IntAct (EBI)Q8NBL3
FunCoupENSG00000152154
BioGRIDTMEM178A
STRING (EMBL)TMEM178A
ZODIACTMEM178A
Ontologies - Pathways
QuickGOQ8NBL3
Ontology : AmiGOendoplasmic reticulum membrane  integral component of membrane  negative regulation of osteoclast differentiation  regulation of cytosolic calcium ion concentration  
Ontology : EGO-EBIendoplasmic reticulum membrane  integral component of membrane  negative regulation of osteoclast differentiation  regulation of cytosolic calcium ion concentration  
NDEx NetworkTMEM178A
Atlas of Cancer Signalling NetworkTMEM178A
Wikipedia pathwaysTMEM178A
Orthology - Evolution
OrthoDB130733
GeneTree (enSembl)ENSG00000152154
Phylogenetic Trees/Animal Genes : TreeFamTMEM178A
HOVERGENQ8NBL3
HOGENOMQ8NBL3
Homologs : HomoloGeneTMEM178A
Homology/Alignments : Family Browser (UCSC)TMEM178A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM178A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM178A
dbVarTMEM178A
ClinVarTMEM178A
1000_GenomesTMEM178A 
Exome Variant ServerTMEM178A
ExAC (Exome Aggregation Consortium)TMEM178A (select the gene name)
Genetic variants : HAPMAP130733
Genomic Variants (DGV)TMEM178A [DGVbeta]
DECIPHERTMEM178A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM178A 
Mutations
ICGC Data PortalTMEM178A 
TCGA Data PortalTMEM178A 
Broad Tumor PortalTMEM178A
OASIS PortalTMEM178A [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTMEM178A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM178A
DgiDB (Drug Gene Interaction Database)TMEM178A
DoCM (Curated mutations)TMEM178A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM178A (select a term)
intoGenTMEM178A
Cancer3DTMEM178A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTMEM178A
Genetic Testing Registry TMEM178A
NextProtQ8NBL3 [Medical]
TSGene130733
GENETestsTMEM178A
Target ValidationTMEM178A
Huge Navigator TMEM178A [HugePedia]
snp3D : Map Gene to Disease130733
BioCentury BCIQTMEM178A
ClinGenTMEM178A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD130733
Chemical/Pharm GKB GenePA162405994
Clinical trialTMEM178A
Miscellaneous
canSAR (ICR)TMEM178A (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM178A
EVEXTMEM178A
GoPubMedTMEM178A
iHOPTMEM178A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:41:46 CEST 2017

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