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TMEM178B (transmembrane protein 178B)

Identity

Alias (NCBI)-
HGNC (Hugo) TMEM178B
HGNC Alias symbDKFZp547G036
LocusID (NCBI) 100507421
Atlas_Id 74840
Location 7q34  [Link to chromosome band 7q34]
Location_base_pair Starts at 141074064 and ends at 141480379 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TMEM178B   44112
Cards
Entrez_Gene (NCBI)TMEM178B    transmembrane protein 178B
Aliases
GeneCards (Weizmann)TMEM178B
Ensembl hg19 (Hinxton)ENSG00000261115 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000261115 [Gene_View]  ENSG00000261115 [Sequence]  chr7:141074064-141480379 [Contig_View]  TMEM178B [Vega]
ICGC DataPortalENSG00000261115
TCGA cBioPortalTMEM178B
AceView (NCBI)TMEM178B
Genatlas (Paris)TMEM178B
SOURCE (Princeton)TMEM178B
Genetics Home Reference (NIH)TMEM178B
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM178B  -     chr7:141074064-141480379 +  7q34   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM178B  -     7q34   [Description]    (hg19-Feb_2009)
GoldenPathTMEM178B - 7q34 [CytoView hg19]  TMEM178B - 7q34 [CytoView hg38]
ImmunoBaseENSG00000261115
Genome Data Viewer NCBITMEM178B [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK096481 AK124873 AL359605
RefSeq transcript (Entrez)NM_001195278
Consensus coding sequences : CCDS (NCBI)TMEM178B
Gene ExpressionTMEM178B [ NCBI-GEO ]   TMEM178B [ EBI - ARRAY_EXPRESS ]   TMEM178B [ SEEK ]   TMEM178B [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM178B [ Firebrowse - Broad ]
GenevisibleExpression of TMEM178B in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100507421
GTEX Portal (Tissue expression)TMEM178B
Human Protein AtlasENSG00000261115-TMEM178B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtH3BS89   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtH3BS89  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProH3BS89
PhosPhoSitePlusH3BS89
Domains : Interpro (EBI)PMP22/EMP/MP20/Claudin    T178A/B   
Domain families : Pfam (Sanger)Claudin_2 (PF13903)   
Domain families : Pfam (NCBI)pfam13903   
Conserved Domain (NCBI)TMEM178B
SuperfamilyH3BS89
AlphaFold pdb e-kbH3BS89   
Human Protein Atlas [tissue]ENSG00000261115-TMEM178B [tissue]
Protein Interaction databases
DIP (DOE-UCLA)H3BS89
IntAct (EBI)H3BS89
BioGRIDTMEM178B
STRING (EMBL)TMEM178B
ZODIACTMEM178B
Ontologies - Pathways
QuickGOH3BS89
Ontology : AmiGOmembrane  integral component of membrane  
Ontology : EGO-EBImembrane  integral component of membrane  
NDEx NetworkTMEM178B
Atlas of Cancer Signalling NetworkTMEM178B
Wikipedia pathwaysTMEM178B
Orthology - Evolution
OrthoDB100507421
GeneTree (enSembl)ENSG00000261115
Phylogenetic Trees/Animal Genes : TreeFamTMEM178B
Homologs : HomoloGeneTMEM178B
Homology/Alignments : Family Browser (UCSC)TMEM178B
Gene fusions - Rearrangements
Fusion : QuiverTMEM178B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM178B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM178B
dbVarTMEM178B
ClinVarTMEM178B
MonarchTMEM178B
1000_GenomesTMEM178B 
Exome Variant ServerTMEM178B
GNOMAD BrowserENSG00000261115
Varsome BrowserTMEM178B
ACMGTMEM178B variants
VarityH3BS89
Genomic Variants (DGV)TMEM178B [DGVbeta]
DECIPHERTMEM178B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM178B 
Mutations
ICGC Data PortalTMEM178B 
TCGA Data PortalTMEM178B 
Broad Tumor PortalTMEM178B
OASIS PortalTMEM178B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM178B  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTMEM178B
Mutations and Diseases : HGMDTMEM178B
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTMEM178B
DgiDB (Drug Gene Interaction Database)TMEM178B
DoCM (Curated mutations)TMEM178B
CIViC (Clinical Interpretations of Variants in Cancer)TMEM178B
Cancer3DTMEM178B
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTMEM178B
MedgenTMEM178B
Genetic Testing Registry TMEM178B
NextProtH3BS89 [Medical]
GENETestsTMEM178B
Target ValidationTMEM178B
Huge Navigator TMEM178B [HugePedia]
ClinGenTMEM178B
Clinical trials, drugs, therapy
MyCancerGenomeTMEM178B
Protein Interactions : CTDTMEM178B
Pharm GKB GenePA166049105
PharosH3BS89
Clinical trialTMEM178B
Miscellaneous
canSAR (ICR)TMEM178B
HarmonizomeTMEM178B
DataMed IndexTMEM178B
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTMEM178B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 16:25:55 CEST 2021

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