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TMEM178B (transmembrane protein 178B)

Identity

Alias_symbol (synonym)DKFZp547G036
Other alias-
HGNC (Hugo) TMEM178B
LocusID (NCBI) 100507421
Atlas_Id 74840
Location 7q34  [Link to chromosome band 7q34]
Location_base_pair Starts at 141074232 and ends at 141480379 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM178B   44112
Cards
Entrez_Gene (NCBI)TMEM178B  100507421  transmembrane protein 178B
Aliases
GeneCards (Weizmann)TMEM178B
Ensembl hg19 (Hinxton)ENSG00000261115 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000261115 [Gene_View]  chr7:141074232-141480379 [Contig_View]  TMEM178B [Vega]
ICGC DataPortalENSG00000261115
TCGA cBioPortalTMEM178B
AceView (NCBI)TMEM178B
Genatlas (Paris)TMEM178B
WikiGenes100507421
SOURCE (Princeton)TMEM178B
Genetics Home Reference (NIH)TMEM178B
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM178B  -     chr7:141074232-141480379 +  7q34   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM178B  -     7q34   [Description]    (hg19-Feb_2009)
EnsemblTMEM178B - 7q34 [CytoView hg19]  TMEM178B - 7q34 [CytoView hg38]
Mapping of homologs : NCBITMEM178B [Mapview hg19]  TMEM178B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK096481 AK124873 AL359605
RefSeq transcript (Entrez)NM_001195278
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMEM178B
Cluster EST : UnigeneHs.283851 [ NCBI ]
CGAP (NCI)Hs.283851
Alternative Splicing GalleryENSG00000261115
Gene ExpressionTMEM178B [ NCBI-GEO ]   TMEM178B [ EBI - ARRAY_EXPRESS ]   TMEM178B [ SEEK ]   TMEM178B [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM178B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100507421
GTEX Portal (Tissue expression)TMEM178B
Protein : pattern, domain, 3D structure
UniProt/SwissProtH3BS89   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtH3BS89  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProH3BS89
Splice isoforms : SwissVarH3BS89
PhosPhoSitePlusH3BS89
Domains : Interpro (EBI)PMP22/EMP/MP20/Claudin   
Domain families : Pfam (Sanger)Claudin_2 (PF13903)   
Domain families : Pfam (NCBI)pfam13903   
Conserved Domain (NCBI)TMEM178B
DMDM Disease mutations100507421
Blocks (Seattle)TMEM178B
SuperfamilyH3BS89
Human Protein AtlasENSG00000261115
Peptide AtlasH3BS89
Protein Interaction databases
DIP (DOE-UCLA)H3BS89
IntAct (EBI)H3BS89
FunCoupENSG00000261115
BioGRIDTMEM178B
STRING (EMBL)TMEM178B
ZODIACTMEM178B
Ontologies - Pathways
QuickGOH3BS89
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkTMEM178B
Atlas of Cancer Signalling NetworkTMEM178B
Wikipedia pathwaysTMEM178B
Orthology - Evolution
OrthoDB100507421
GeneTree (enSembl)ENSG00000261115
Phylogenetic Trees/Animal Genes : TreeFamTMEM178B
HOVERGENH3BS89
HOGENOMH3BS89
Homologs : HomoloGeneTMEM178B
Homology/Alignments : Family Browser (UCSC)TMEM178B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM178B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM178B
dbVarTMEM178B
ClinVarTMEM178B
1000_GenomesTMEM178B 
Exome Variant ServerTMEM178B
ExAC (Exome Aggregation Consortium)TMEM178B (select the gene name)
Genetic variants : HAPMAP100507421
Genomic Variants (DGV)TMEM178B [DGVbeta]
DECIPHERTMEM178B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM178B 
Mutations
ICGC Data PortalTMEM178B 
TCGA Data PortalTMEM178B 
Broad Tumor PortalTMEM178B
OASIS PortalTMEM178B [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTMEM178B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM178B
DgiDB (Drug Gene Interaction Database)TMEM178B
DoCM (Curated mutations)TMEM178B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM178B (select a term)
intoGenTMEM178B
Cancer3DTMEM178B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTMEM178B
Genetic Testing Registry TMEM178B
NextProtH3BS89 [Medical]
TSGene100507421
GENETestsTMEM178B
Target ValidationTMEM178B
Huge Navigator TMEM178B [HugePedia]
snp3D : Map Gene to Disease100507421
BioCentury BCIQTMEM178B
ClinGenTMEM178B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100507421
Chemical/Pharm GKB GenePA166049105
Clinical trialTMEM178B
Miscellaneous
canSAR (ICR)TMEM178B (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM178B
EVEXTMEM178B
GoPubMedTMEM178B
iHOPTMEM178B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:41:46 CEST 2017

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