Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TMEM179 (transmembrane protein 179)

Identity

Alias_namesC14orf90
chromosome 14 open reading frame 90
Alias_symbol (synonym)FLJ42486
TMEM179A
Other alias
HGNC (Hugo) TMEM179
LocusID (NCBI) 388021
Atlas_Id 74841
Location 14q32.33  [Link to chromosome band 14q32]
Location_base_pair Starts at 104590864 and ends at 104604760 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM179   20137
Cards
Entrez_Gene (NCBI)TMEM179  388021  transmembrane protein 179
AliasesC14orf90; TMEM179A
GeneCards (Weizmann)TMEM179
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr14:104590864-104604760 [Contig_View]  TMEM179 [Vega]
TCGA cBioPortalTMEM179
AceView (NCBI)TMEM179
Genatlas (Paris)TMEM179
WikiGenes388021
SOURCE (Princeton)TMEM179
Genetics Home Reference (NIH)TMEM179
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM179  -     chr14:104590864-104604760 -  14q32.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM179  -     14q32.33   [Description]    (hg19-Feb_2009)
EnsemblTMEM179 - 14q32.33 [CytoView hg19]  TMEM179 - 14q32.33 [CytoView hg38]
Mapping of homologs : NCBITMEM179 [Mapview hg19]  TMEM179 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF462446 AI299168 AK124477 AW026835 BC047917
RefSeq transcript (Entrez)NM_001286389 NM_001286390 NM_207379
RefSeq genomic (Entrez)NC_000014 NC_018925 NT_187599
Consensus coding sequences : CCDS (NCBI)TMEM179
Cluster EST : UnigeneHs.655004 [ NCBI ]
CGAP (NCI)Hs.655004
Gene ExpressionTMEM179 [ NCBI-GEO ]   TMEM179 [ EBI - ARRAY_EXPRESS ]   TMEM179 [ SEEK ]   TMEM179 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM179 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)388021
GTEX Portal (Tissue expression)TMEM179
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZVK1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZVK1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZVK1
Splice isoforms : SwissVarQ6ZVK1
PhosPhoSitePlusQ6ZVK1
Domains : Interpro (EBI)TMEM179   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TMEM179
DMDM Disease mutations388021
Blocks (Seattle)TMEM179
SuperfamilyQ6ZVK1
Peptide AtlasQ6ZVK1
HPRD13464
IPIIPI00788838   IPI00399003   IPI01025014   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZVK1
IntAct (EBI)Q6ZVK1
BioGRIDTMEM179
STRING (EMBL)TMEM179
ZODIACTMEM179
Ontologies - Pathways
QuickGOQ6ZVK1
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkTMEM179
Atlas of Cancer Signalling NetworkTMEM179
Wikipedia pathwaysTMEM179
Orthology - Evolution
OrthoDB388021
Phylogenetic Trees/Animal Genes : TreeFamTMEM179
HOVERGENQ6ZVK1
HOGENOMQ6ZVK1
Homologs : HomoloGeneTMEM179
Homology/Alignments : Family Browser (UCSC)TMEM179
Gene fusions - Rearrangements
Tumor Fusion PortalTMEM179
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM179 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM179
dbVarTMEM179
ClinVarTMEM179
1000_GenomesTMEM179 
Exome Variant ServerTMEM179
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP388021
Genomic Variants (DGV)TMEM179 [DGVbeta]
DECIPHERTMEM179 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM179 
Mutations
ICGC Data PortalTMEM179 
TCGA Data PortalTMEM179 
Broad Tumor PortalTMEM179
OASIS PortalTMEM179 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM179  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM179
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM179
DgiDB (Drug Gene Interaction Database)TMEM179
DoCM (Curated mutations)TMEM179 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM179 (select a term)
intoGenTMEM179
Cancer3DTMEM179(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTMEM179
MedgenTMEM179
Genetic Testing Registry TMEM179
NextProtQ6ZVK1 [Medical]
TSGene388021
GENETestsTMEM179
Target ValidationTMEM179
Huge Navigator TMEM179 [HugePedia]
snp3D : Map Gene to Disease388021
BioCentury BCIQTMEM179
ClinGenTMEM179
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD388021
Chemical/Pharm GKB GenePA162405995
Clinical trialTMEM179
Miscellaneous
canSAR (ICR)TMEM179 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM179
EVEXTMEM179
GoPubMedTMEM179
iHOPTMEM179
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:30:44 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.