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TMEM179 (transmembrane protein 179)

Identity

Alias (NCBI)C14orf90
TMEM179A
HGNC (Hugo) TMEM179
HGNC Alias symbFLJ42486
TMEM179A
HGNC Previous nameC14orf90
HGNC Previous namechromosome 14 open reading frame 90
LocusID (NCBI) 388021
Atlas_Id 74841
Location 14q32.33  [Link to chromosome band 14q32]
Location_base_pair Starts at 104594081 and ends at 104604760 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TMEM179   20137
Cards
Entrez_Gene (NCBI)TMEM179    transmembrane protein 179
AliasesC14orf90; TMEM179A
GeneCards (Weizmann)TMEM179
Ensembl hg19 (Hinxton)ENSG00000258986 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000258986 [Gene_View]  ENSG00000258986 [Sequence]  chr14:104594081-104604760 [Contig_View]  TMEM179 [Vega]
ICGC DataPortalENSG00000258986
TCGA cBioPortalTMEM179
AceView (NCBI)TMEM179
Genatlas (Paris)TMEM179
SOURCE (Princeton)TMEM179
Genetics Home Reference (NIH)TMEM179
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM179  -     chr14:104594081-104604760 -  14q32.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM179  -     14q32.33   [Description]    (hg19-Feb_2009)
GoldenPathTMEM179 - 14q32.33 [CytoView hg19]  TMEM179 - 14q32.33 [CytoView hg38]
ImmunoBaseENSG00000258986
Genome Data Viewer NCBITMEM179 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AF462446 AI299168 AK124477 AW026835 BC047917
RefSeq transcript (Entrez)NM_001286389 NM_001286390 NM_207379
Consensus coding sequences : CCDS (NCBI)TMEM179
Gene ExpressionTMEM179 [ NCBI-GEO ]   TMEM179 [ EBI - ARRAY_EXPRESS ]   TMEM179 [ SEEK ]   TMEM179 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM179 [ Firebrowse - Broad ]
GenevisibleExpression of TMEM179 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)388021
GTEX Portal (Tissue expression)TMEM179
Human Protein AtlasENSG00000258986-TMEM179 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZVK1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZVK1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZVK1
PhosPhoSitePlusQ6ZVK1
Domains : Interpro (EBI)TMEM179   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TMEM179
SuperfamilyQ6ZVK1
AlphaFold pdb e-kbQ6ZVK1   
Human Protein Atlas [tissue]ENSG00000258986-TMEM179 [tissue]
HPRD13464
Protein Interaction databases
DIP (DOE-UCLA)Q6ZVK1
IntAct (EBI)Q6ZVK1
BioGRIDTMEM179
STRING (EMBL)TMEM179
ZODIACTMEM179
Ontologies - Pathways
QuickGOQ6ZVK1
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkTMEM179
Atlas of Cancer Signalling NetworkTMEM179
Wikipedia pathwaysTMEM179
Orthology - Evolution
OrthoDB388021
GeneTree (enSembl)ENSG00000258986
Phylogenetic Trees/Animal Genes : TreeFamTMEM179
Homologs : HomoloGeneTMEM179
Homology/Alignments : Family Browser (UCSC)TMEM179
Gene fusions - Rearrangements
Fusion : QuiverTMEM179
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM179 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM179
dbVarTMEM179
ClinVarTMEM179
MonarchTMEM179
1000_GenomesTMEM179 
Exome Variant ServerTMEM179
GNOMAD BrowserENSG00000258986
Varsome BrowserTMEM179
ACMGTMEM179 variants
VarityQ6ZVK1
Genomic Variants (DGV)TMEM179 [DGVbeta]
DECIPHERTMEM179 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM179 
Mutations
ICGC Data PortalTMEM179 
TCGA Data PortalTMEM179 
Broad Tumor PortalTMEM179
OASIS PortalTMEM179 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM179  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTMEM179
Mutations and Diseases : HGMDTMEM179
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTMEM179
DgiDB (Drug Gene Interaction Database)TMEM179
DoCM (Curated mutations)TMEM179
CIViC (Clinical Interpretations of Variants in Cancer)TMEM179
Cancer3DTMEM179
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTMEM179
MedgenTMEM179
Genetic Testing Registry TMEM179
NextProtQ6ZVK1 [Medical]
GENETestsTMEM179
Target ValidationTMEM179
Huge Navigator TMEM179 [HugePedia]
ClinGenTMEM179
Clinical trials, drugs, therapy
MyCancerGenomeTMEM179
Protein Interactions : CTDTMEM179
Pharm GKB GenePA162405995
PharosQ6ZVK1
Clinical trialTMEM179
Miscellaneous
canSAR (ICR)TMEM179
HarmonizomeTMEM179
DataMed IndexTMEM179
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTMEM179
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:25:55 CEST 2021

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