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TMEM179B (transmembrane protein 179B)

Identity

Other alias-
HGNC (Hugo) TMEM179B
LocusID (NCBI) 374395
Atlas_Id 74842
Location 11q12.3  [Link to chromosome band 11q12]
Location_base_pair Starts at 62787402 and ends at 62790400 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TCEAL3 (Xq22.2) / TMEM179B (11q12.3)TMEM179B (11q12.3) / SCGB1D1 (11q12.3)TMEM179B (11q12.3) / TAF6L (11q12.3)
TMEM179B (11q12.3) / TCEAL3 (Xq22.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM179B   33744
Cards
Entrez_Gene (NCBI)TMEM179B  374395  transmembrane protein 179B
Aliases
GeneCards (Weizmann)TMEM179B
Ensembl hg19 (Hinxton)ENSG00000185475 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000185475 [Gene_View]  chr11:62787402-62790400 [Contig_View]  TMEM179B [Vega]
ICGC DataPortalENSG00000185475
TCGA cBioPortalTMEM179B
AceView (NCBI)TMEM179B
Genatlas (Paris)TMEM179B
WikiGenes374395
SOURCE (Princeton)TMEM179B
Genetics Home Reference (NIH)TMEM179B
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM179B  -     chr11:62787402-62790400 +  11q12.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM179B  -     11q12.3   [Description]    (hg19-Feb_2009)
EnsemblTMEM179B - 11q12.3 [CytoView hg19]  TMEM179B - 11q12.3 [CytoView hg38]
Mapping of homologs : NCBITMEM179B [Mapview hg19]  TMEM179B [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC051355 BE439533 BM684628
RefSeq transcript (Entrez)NM_199337
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMEM179B
Cluster EST : UnigeneHs.381134 [ NCBI ]
CGAP (NCI)Hs.381134
Alternative Splicing GalleryENSG00000185475
Gene ExpressionTMEM179B [ NCBI-GEO ]   TMEM179B [ EBI - ARRAY_EXPRESS ]   TMEM179B [ SEEK ]   TMEM179B [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM179B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)374395
GTEX Portal (Tissue expression)TMEM179B
Human Protein AtlasENSG00000185475-TMEM179B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z7N9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z7N9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z7N9
Splice isoforms : SwissVarQ7Z7N9
PhosPhoSitePlusQ7Z7N9
Domains : Interpro (EBI)TMEM179B   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TMEM179B
DMDM Disease mutations374395
Blocks (Seattle)TMEM179B
SuperfamilyQ7Z7N9
Human Protein Atlas [tissue]ENSG00000185475-TMEM179B [tissue]
Peptide AtlasQ7Z7N9
HPRD14186
IPIIPI00334453   IPI00984272   IPI00983522   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z7N9
IntAct (EBI)Q7Z7N9
FunCoupENSG00000185475
BioGRIDTMEM179B
STRING (EMBL)TMEM179B
ZODIACTMEM179B
Ontologies - Pathways
QuickGOQ7Z7N9
Ontology : AmiGOnucleolus  plasma membrane  integral component of membrane  nuclear speck  secretory granule membrane  azurophil granule membrane  neutrophil degranulation  ficolin-1-rich granule membrane  
Ontology : EGO-EBInucleolus  plasma membrane  integral component of membrane  nuclear speck  secretory granule membrane  azurophil granule membrane  neutrophil degranulation  ficolin-1-rich granule membrane  
NDEx NetworkTMEM179B
Atlas of Cancer Signalling NetworkTMEM179B
Wikipedia pathwaysTMEM179B
Orthology - Evolution
OrthoDB374395
GeneTree (enSembl)ENSG00000185475
Phylogenetic Trees/Animal Genes : TreeFamTMEM179B
HOVERGENQ7Z7N9
HOGENOMQ7Z7N9
Homologs : HomoloGeneTMEM179B
Homology/Alignments : Family Browser (UCSC)TMEM179B
Gene fusions - Rearrangements
Fusion: Tumor Portal TMEM179B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM179B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM179B
dbVarTMEM179B
ClinVarTMEM179B
1000_GenomesTMEM179B 
Exome Variant ServerTMEM179B
ExAC (Exome Aggregation Consortium)ENSG00000185475
GNOMAD BrowserENSG00000185475
Genetic variants : HAPMAP374395
Genomic Variants (DGV)TMEM179B [DGVbeta]
DECIPHERTMEM179B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM179B 
Mutations
ICGC Data PortalTMEM179B 
TCGA Data PortalTMEM179B 
Broad Tumor PortalTMEM179B
OASIS PortalTMEM179B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM179B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM179B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM179B
DgiDB (Drug Gene Interaction Database)TMEM179B
DoCM (Curated mutations)TMEM179B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM179B (select a term)
intoGenTMEM179B
Cancer3DTMEM179B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTMEM179B
Genetic Testing Registry TMEM179B
NextProtQ7Z7N9 [Medical]
TSGene374395
GENETestsTMEM179B
Target ValidationTMEM179B
Huge Navigator TMEM179B [HugePedia]
snp3D : Map Gene to Disease374395
BioCentury BCIQTMEM179B
ClinGenTMEM179B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD374395
Chemical/Pharm GKB GenePA162405996
Clinical trialTMEM179B
Miscellaneous
canSAR (ICR)TMEM179B (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM179B
EVEXTMEM179B
GoPubMedTMEM179B
iHOPTMEM179B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:32:52 CET 2017

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