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TMEM180 (transmembrane protein 180)

Identity

Other aliasC10orf77
bA18I14.8
HGNC (Hugo) TMEM180
LocusID (NCBI) 79847
Atlas_Id 74843
Location 10q24.32  [Link to chromosome band 10q24]
Location_base_pair Starts at 104221170 and ends at 104236802 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM180   26196
Cards
Entrez_Gene (NCBI)TMEM180  79847  transmembrane protein 180
AliasesC10orf77; bA18I14.8
GeneCards (Weizmann)TMEM180
Ensembl hg19 (Hinxton)ENSG00000138111 [Gene_View]  chr10:104221170-104236802 [Contig_View]  TMEM180 [Vega]
Ensembl hg38 (Hinxton)ENSG00000138111 [Gene_View]  chr10:104221170-104236802 [Contig_View]  TMEM180 [Vega]
ICGC DataPortalENSG00000138111
TCGA cBioPortalTMEM180
AceView (NCBI)TMEM180
Genatlas (Paris)TMEM180
WikiGenes79847
SOURCE (Princeton)TMEM180
Genetics Home Reference (NIH)TMEM180
Genomic and cartography
GoldenPath hg19 (UCSC)TMEM180  -     chr10:104221170-104236802 +  10q24.32   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TMEM180  -     10q24.32   [Description]    (hg38-Dec_2013)
EnsemblTMEM180 - 10q24.32 [CytoView hg19]  TMEM180 - 10q24.32 [CytoView hg38]
Mapping of homologs : NCBITMEM180 [Mapview hg19]  TMEM180 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK026182 AK296583 AK301612 AY358808 BC057787
RefSeq transcript (Entrez)NM_024789
RefSeq genomic (Entrez)NC_000010 NC_018921 NT_030059 NW_004929376
Consensus coding sequences : CCDS (NCBI)TMEM180
Cluster EST : UnigeneHs.309069 [ NCBI ]
CGAP (NCI)Hs.309069
Alternative Splicing GalleryENSG00000138111
Gene ExpressionTMEM180 [ NCBI-GEO ]   TMEM180 [ EBI - ARRAY_EXPRESS ]   TMEM180 [ SEEK ]   TMEM180 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM180 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79847
GTEX Portal (Tissue expression)TMEM180
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ14CX5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ14CX5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ14CX5
Splice isoforms : SwissVarQ14CX5
PhosPhoSitePlusQ14CX5
Domains : Interpro (EBI)MFS_dom   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TMEM180
DMDM Disease mutations79847
Blocks (Seattle)TMEM180
SuperfamilyQ14CX5
Human Protein AtlasENSG00000138111
Peptide AtlasQ14CX5
HPRD12589
IPIIPI00398897   IPI00910744   IPI00432178   IPI01015283   
Protein Interaction databases
DIP (DOE-UCLA)Q14CX5
IntAct (EBI)Q14CX5
FunCoupENSG00000138111
BioGRIDTMEM180
STRING (EMBL)TMEM180
ZODIACTMEM180
Ontologies - Pathways
QuickGOQ14CX5
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkTMEM180
Atlas of Cancer Signalling NetworkTMEM180
Wikipedia pathwaysTMEM180
Orthology - Evolution
OrthoDB79847
GeneTree (enSembl)ENSG00000138111
Phylogenetic Trees/Animal Genes : TreeFamTMEM180
HOVERGENQ14CX5
HOGENOMQ14CX5
Homologs : HomoloGeneTMEM180
Homology/Alignments : Family Browser (UCSC)TMEM180
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM180 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM180
dbVarTMEM180
ClinVarTMEM180
1000_GenomesTMEM180 
Exome Variant ServerTMEM180
ExAC (Exome Aggregation Consortium)TMEM180 (select the gene name)
Genetic variants : HAPMAP79847
Genomic Variants (DGV)TMEM180 [DGVbeta]
DECIPHER (Syndromes)10:104221170-104236802  ENSG00000138111
CONAN: Copy Number AnalysisTMEM180 
Mutations
ICGC Data PortalTMEM180 
TCGA Data PortalTMEM180 
Broad Tumor PortalTMEM180
OASIS PortalTMEM180 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM180  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM180
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM180
DgiDB (Drug Gene Interaction Database)TMEM180
DoCM (Curated mutations)TMEM180 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM180 (select a term)
intoGenTMEM180
Cancer3DTMEM180(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTMEM180
Genetic Testing Registry TMEM180
NextProtQ14CX5 [Medical]
TSGene79847
GENETestsTMEM180
Huge Navigator TMEM180 [HugePedia]
snp3D : Map Gene to Disease79847
BioCentury BCIQTMEM180
ClinGenTMEM180
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79847
Chemical/Pharm GKB GenePA162406011
Clinical trialTMEM180
Miscellaneous
canSAR (ICR)TMEM180 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM180
EVEXTMEM180
GoPubMedTMEM180
iHOPTMEM180
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:48:36 CET 2017

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