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TMEM182 (transmembrane protein 182)

Identity

Alias_symbol (synonym)FLJ30294
Other alias-
HGNC (Hugo) TMEM182
LocusID (NCBI) 130827
Atlas_Id 74845
Location 2q12.1  [Link to chromosome band 2q12]
Location_base_pair Starts at 102736906 and ends at 102817679 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
AFF3 (2q11.2) / TMEM182 (2q12.1)TMEM182 (2q12.1) / ADAMTS12 (5p13.3)TMEM182 (2q12.1) / ARHGAP15 (2q22.2)
TMEM182 ADAMTS12TMEM182 ARHGAP15

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM182   26391
Cards
Entrez_Gene (NCBI)TMEM182  130827  transmembrane protein 182
Aliases
GeneCards (Weizmann)TMEM182
Ensembl hg19 (Hinxton)ENSG00000170417 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000170417 [Gene_View]  chr2:102736906-102817679 [Contig_View]  TMEM182 [Vega]
ICGC DataPortalENSG00000170417
TCGA cBioPortalTMEM182
AceView (NCBI)TMEM182
Genatlas (Paris)TMEM182
WikiGenes130827
SOURCE (Princeton)TMEM182
Genetics Home Reference (NIH)TMEM182
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM182  -     chr2:102736906-102817679 +  2q12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM182  -     2q12.1   [Description]    (hg19-Feb_2009)
EnsemblTMEM182 - 2q12.1 [CytoView hg19]  TMEM182 - 2q12.1 [CytoView hg38]
Mapping of homologs : NCBITMEM182 [Mapview hg19]  TMEM182 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK054856 AK129862 AL832688 AY358262 BC020898
RefSeq transcript (Entrez)NM_001321343 NM_001321344 NM_001321345 NM_001321346 NM_144632
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMEM182
Cluster EST : UnigeneHs.436203 [ NCBI ]
CGAP (NCI)Hs.436203
Alternative Splicing GalleryENSG00000170417
Gene ExpressionTMEM182 [ NCBI-GEO ]   TMEM182 [ EBI - ARRAY_EXPRESS ]   TMEM182 [ SEEK ]   TMEM182 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM182 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)130827
GTEX Portal (Tissue expression)TMEM182
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZP80   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZP80  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZP80
Splice isoforms : SwissVarQ6ZP80
PhosPhoSitePlusQ6ZP80
Domains : Interpro (EBI)PMP22/EMP/MP20/Claudin    TMEM182   
Domain families : Pfam (Sanger)Claudin_2 (PF13903)   
Domain families : Pfam (NCBI)pfam13903   
Conserved Domain (NCBI)TMEM182
DMDM Disease mutations130827
Blocks (Seattle)TMEM182
SuperfamilyQ6ZP80
Human Protein AtlasENSG00000170417
Peptide AtlasQ6ZP80
HPRD08698
IPIIPI00792177   IPI00848078   IPI00922274   IPI00916751   IPI00848171   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZP80
IntAct (EBI)Q6ZP80
FunCoupENSG00000170417
BioGRIDTMEM182
STRING (EMBL)TMEM182
ZODIACTMEM182
Ontologies - Pathways
QuickGOQ6ZP80
Ontology : AmiGOprotein binding  integral component of membrane  
Ontology : EGO-EBIprotein binding  integral component of membrane  
NDEx NetworkTMEM182
Atlas of Cancer Signalling NetworkTMEM182
Wikipedia pathwaysTMEM182
Orthology - Evolution
OrthoDB130827
GeneTree (enSembl)ENSG00000170417
Phylogenetic Trees/Animal Genes : TreeFamTMEM182
HOVERGENQ6ZP80
HOGENOMQ6ZP80
Homologs : HomoloGeneTMEM182
Homology/Alignments : Family Browser (UCSC)TMEM182
Gene fusions - Rearrangements
Fusion: TCGATMEM182 ADAMTS12
Fusion: TCGATMEM182 ARHGAP15
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM182 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM182
dbVarTMEM182
ClinVarTMEM182
1000_GenomesTMEM182 
Exome Variant ServerTMEM182
ExAC (Exome Aggregation Consortium)TMEM182 (select the gene name)
Genetic variants : HAPMAP130827
Genomic Variants (DGV)TMEM182 [DGVbeta]
DECIPHERTMEM182 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM182 
Mutations
ICGC Data PortalTMEM182 
TCGA Data PortalTMEM182 
Broad Tumor PortalTMEM182
OASIS PortalTMEM182 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM182  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM182
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM182
DgiDB (Drug Gene Interaction Database)TMEM182
DoCM (Curated mutations)TMEM182 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM182 (select a term)
intoGenTMEM182
Cancer3DTMEM182(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTMEM182
Genetic Testing Registry TMEM182
NextProtQ6ZP80 [Medical]
TSGene130827
GENETestsTMEM182
Target ValidationTMEM182
Huge Navigator TMEM182 [HugePedia]
snp3D : Map Gene to Disease130827
BioCentury BCIQTMEM182
ClinGenTMEM182
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD130827
Chemical/Pharm GKB GenePA162406075
Clinical trialTMEM182
Miscellaneous
canSAR (ICR)TMEM182 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM182
EVEXTMEM182
GoPubMedTMEM182
iHOPTMEM182
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:41:46 CEST 2017

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