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TMEM183A (transmembrane protein 183A)

Identity

Alias_namesC1orf37
chromosome 1 open reading frame 37
Other alias
HGNC (Hugo) TMEM183A
LocusID (NCBI) 92703
Atlas_Id 74846
Location 1q32.1  [Link to chromosome band 1q32]
Location_base_pair Starts at 203007367 and ends at 203024848 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Leukemias implicated (Data extracted from papers in the Atlas) [ 2 ]
  dup(1q) in ALL
dup(1q) in ALL


External links

Nomenclature
HGNC (Hugo)TMEM183A   20173
Cards
Entrez_Gene (NCBI)TMEM183A  92703  transmembrane protein 183A
AliasesC1orf37
GeneCards (Weizmann)TMEM183A
Ensembl hg19 (Hinxton)ENSG00000163444 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000163444 [Gene_View]  chr1:203007367-203024848 [Contig_View]  TMEM183A [Vega]
ICGC DataPortalENSG00000163444
TCGA cBioPortalTMEM183A
AceView (NCBI)TMEM183A
Genatlas (Paris)TMEM183A
WikiGenes92703
SOURCE (Princeton)TMEM183A
Genetics Home Reference (NIH)TMEM183A
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM183A  -     chr1:203007367-203024848 +  1q32.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM183A  -     1q32.1   [Description]    (hg19-Feb_2009)
EnsemblTMEM183A - 1q32.1 [CytoView hg19]  TMEM183A - 1q32.1 [CytoView hg38]
Mapping of homologs : NCBITMEM183A [Mapview hg19]  TMEM183A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF070537 AK291426 AK309745 AK312985 AL133052
RefSeq transcript (Entrez)NM_001322955 NM_001322956 NM_001322957 NM_001322958 NM_001322959 NM_001349859 NM_001349862 NM_138391
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMEM183A
Cluster EST : UnigeneHs.497443 [ NCBI ]
CGAP (NCI)Hs.497443
Alternative Splicing GalleryENSG00000163444
Gene ExpressionTMEM183A [ NCBI-GEO ]   TMEM183A [ EBI - ARRAY_EXPRESS ]   TMEM183A [ SEEK ]   TMEM183A [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM183A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)92703
GTEX Portal (Tissue expression)TMEM183A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IXX5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IXX5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IXX5
Splice isoforms : SwissVarQ8IXX5
PhosPhoSitePlusQ8IXX5
Domains : Interpro (EBI)F-box_dom    TMEM183   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TMEM183A
DMDM Disease mutations92703
Blocks (Seattle)TMEM183A
SuperfamilyQ8IXX5
Human Protein AtlasENSG00000163444
Peptide AtlasQ8IXX5
HPRD12727
IPIIPI00293381   IPI00641417   IPI00930148   IPI00883982   
Protein Interaction databases
DIP (DOE-UCLA)Q8IXX5
IntAct (EBI)Q8IXX5
FunCoupENSG00000163444
BioGRIDTMEM183A
STRING (EMBL)TMEM183A
ZODIACTMEM183A
Ontologies - Pathways
QuickGOQ8IXX5
Ontology : AmiGOprotein binding  integral component of membrane  
Ontology : EGO-EBIprotein binding  integral component of membrane  
NDEx NetworkTMEM183A
Atlas of Cancer Signalling NetworkTMEM183A
Wikipedia pathwaysTMEM183A
Orthology - Evolution
OrthoDB92703
GeneTree (enSembl)ENSG00000163444
Phylogenetic Trees/Animal Genes : TreeFamTMEM183A
HOVERGENQ8IXX5
HOGENOMQ8IXX5
Homologs : HomoloGeneTMEM183A
Homology/Alignments : Family Browser (UCSC)TMEM183A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM183A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM183A
dbVarTMEM183A
ClinVarTMEM183A
1000_GenomesTMEM183A 
Exome Variant ServerTMEM183A
ExAC (Exome Aggregation Consortium)TMEM183A (select the gene name)
Genetic variants : HAPMAP92703
Genomic Variants (DGV)TMEM183A [DGVbeta]
DECIPHERTMEM183A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM183A 
Mutations
ICGC Data PortalTMEM183A 
TCGA Data PortalTMEM183A 
Broad Tumor PortalTMEM183A
OASIS PortalTMEM183A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM183A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM183A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM183A
DgiDB (Drug Gene Interaction Database)TMEM183A
DoCM (Curated mutations)TMEM183A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM183A (select a term)
intoGenTMEM183A
Cancer3DTMEM183A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTMEM183A
Genetic Testing Registry TMEM183A
NextProtQ8IXX5 [Medical]
TSGene92703
GENETestsTMEM183A
Target ValidationTMEM183A
Huge Navigator TMEM183A [HugePedia]
snp3D : Map Gene to Disease92703
BioCentury BCIQTMEM183A
ClinGenTMEM183A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD92703
Chemical/Pharm GKB GenePA162406090
Clinical trialTMEM183A
Miscellaneous
canSAR (ICR)TMEM183A (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM183A
EVEXTMEM183A
GoPubMedTMEM183A
iHOPTMEM183A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Sep 18 13:41:47 CEST 2017

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