Atlas of Genetics and Cytogenetics in Oncology and Haematology


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TMEM183A (transmembrane protein 183A)

Identity

Alias (NCBI)C1orf37
HGNC (Hugo) TMEM183A
HGNC Previous nameC1orf37
HGNC Previous namechromosome 1 open reading frame 37
LocusID (NCBI) 92703
Atlas_Id 74846
Location 1q32.1  [Link to chromosome band 1q32]
Location_base_pair Starts at 203007374 and ends at 203024848 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



Other Leukemias implicated (Data extracted from papers in the Atlas) [ 2 ]
  dup(1q) in ALL
dup(1q) in ALL


External links

 

Nomenclature
HGNC (Hugo)TMEM183A   20173
Cards
Entrez_Gene (NCBI)TMEM183A    transmembrane protein 183A
AliasesC1orf37
GeneCards (Weizmann)TMEM183A
Ensembl hg19 (Hinxton)ENSG00000163444 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000163444 [Gene_View]  ENSG00000163444 [Sequence]  chr1:203007374-203024848 [Contig_View]  TMEM183A [Vega]
ICGC DataPortalENSG00000163444
TCGA cBioPortalTMEM183A
AceView (NCBI)TMEM183A
Genatlas (Paris)TMEM183A
SOURCE (Princeton)TMEM183A
Genetics Home Reference (NIH)TMEM183A
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM183A  -     chr1:203007374-203024848 +  1q32.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM183A  -     1q32.1   [Description]    (hg19-Feb_2009)
GoldenPathTMEM183A - 1q32.1 [CytoView hg19]  TMEM183A - 1q32.1 [CytoView hg38]
ImmunoBaseENSG00000163444
Genome Data Viewer NCBITMEM183A [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AF070537 AK291426 AK309745 AK312985 AL133052
RefSeq transcript (Entrez)NM_001322955 NM_001322956 NM_001322957 NM_001322958 NM_001322959 NM_001349859 NM_001349862 NM_138391
Consensus coding sequences : CCDS (NCBI)TMEM183A
Gene ExpressionTMEM183A [ NCBI-GEO ]   TMEM183A [ EBI - ARRAY_EXPRESS ]   TMEM183A [ SEEK ]   TMEM183A [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM183A [ Firebrowse - Broad ]
GenevisibleExpression of TMEM183A in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)92703
GTEX Portal (Tissue expression)TMEM183A
Human Protein AtlasENSG00000163444-TMEM183A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IXX5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IXX5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IXX5
PhosPhoSitePlusQ8IXX5
Domains : Interpro (EBI)F-box-like_dom_sf    TMEM183   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TMEM183A
SuperfamilyQ8IXX5
AlphaFold pdb e-kbQ8IXX5   
Human Protein Atlas [tissue]ENSG00000163444-TMEM183A [tissue]
HPRD12727
Protein Interaction databases
DIP (DOE-UCLA)Q8IXX5
IntAct (EBI)Q8IXX5
BioGRIDTMEM183A
STRING (EMBL)TMEM183A
ZODIACTMEM183A
Ontologies - Pathways
QuickGOQ8IXX5
Ontology : AmiGOprotein binding  integral component of membrane  
Ontology : EGO-EBIprotein binding  integral component of membrane  
NDEx NetworkTMEM183A
Atlas of Cancer Signalling NetworkTMEM183A
Wikipedia pathwaysTMEM183A
Orthology - Evolution
OrthoDB92703
GeneTree (enSembl)ENSG00000163444
Phylogenetic Trees/Animal Genes : TreeFamTMEM183A
Homologs : HomoloGeneTMEM183A
Homology/Alignments : Family Browser (UCSC)TMEM183A
Gene fusions - Rearrangements
Fusion : QuiverTMEM183A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM183A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM183A
dbVarTMEM183A
ClinVarTMEM183A
MonarchTMEM183A
1000_GenomesTMEM183A 
Exome Variant ServerTMEM183A
GNOMAD BrowserENSG00000163444
Varsome BrowserTMEM183A
ACMGTMEM183A variants
VarityQ8IXX5
Genomic Variants (DGV)TMEM183A [DGVbeta]
DECIPHERTMEM183A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM183A 
Mutations
ICGC Data PortalTMEM183A 
TCGA Data PortalTMEM183A 
Broad Tumor PortalTMEM183A
OASIS PortalTMEM183A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM183A  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTMEM183A
Mutations and Diseases : HGMDTMEM183A
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTMEM183A
DgiDB (Drug Gene Interaction Database)TMEM183A
DoCM (Curated mutations)TMEM183A
CIViC (Clinical Interpretations of Variants in Cancer)TMEM183A
Cancer3DTMEM183A
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTMEM183A
MedgenTMEM183A
Genetic Testing Registry TMEM183A
NextProtQ8IXX5 [Medical]
GENETestsTMEM183A
Target ValidationTMEM183A
Huge Navigator TMEM183A [HugePedia]
ClinGenTMEM183A
Clinical trials, drugs, therapy
MyCancerGenomeTMEM183A
Protein Interactions : CTDTMEM183A
Pharm GKB GenePA162406090
PharosQ8IXX5
Clinical trialTMEM183A
Miscellaneous
canSAR (ICR)TMEM183A
HarmonizomeTMEM183A
DataMed IndexTMEM183A
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTMEM183A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 16:25:56 CEST 2021

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