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TMEM184B (transmembrane protein 184B)

Identity

Alias_namesC22orf5
chromosome 22 open reading frame 5
Alias_symbol (synonym)HS5O6A
DKFZP586A1024
FM08
Other aliasHSPC256
HGNC (Hugo) TMEM184B
LocusID (NCBI) 25829
Atlas_Id 55227
Location 22q13.1  [Link to chromosome band 22q13]
Location_base_pair Starts at 38219291 and ends at 38272664 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PLA2G6 (22q13.1) / TMEM184B (22q13.1)TMEM184B (22q13.1) / RNF25 (2q35)TMEM184B (22q13.1) / VPS72 (1q21.3)
TNRC6B (22q13.1) / TMEM184B (22q13.1)PLA2G6 22q13.1 / TMEM184B 22q13.1TMEM184B 22q13.1 / RNF25 2q35

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM184B   1310
Cards
Entrez_Gene (NCBI)TMEM184B  25829  transmembrane protein 184B
AliasesC22orf5; FM08; HS5O6A; HSPC256
GeneCards (Weizmann)TMEM184B
Ensembl hg19 (Hinxton)ENSG00000198792 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198792 [Gene_View]  chr22:38219291-38272664 [Contig_View]  TMEM184B [Vega]
ICGC DataPortalENSG00000198792
TCGA cBioPortalTMEM184B
AceView (NCBI)TMEM184B
Genatlas (Paris)TMEM184B
WikiGenes25829
SOURCE (Princeton)TMEM184B
Genetics Home Reference (NIH)TMEM184B
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM184B  -     chr22:38219291-38272664 -  22q13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM184B  -     22q13.1   [Description]    (hg19-Feb_2009)
EnsemblTMEM184B - 22q13.1 [CytoView hg19]  TMEM184B - 22q13.1 [CytoView hg38]
Mapping of homologs : NCBITMEM184B [Mapview hg19]  TMEM184B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB097053 AF161374 AK075417 AK095109 AK292652
RefSeq transcript (Entrez)NM_001195071 NM_001195072 NM_012264
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMEM184B
Cluster EST : UnigeneHs.182626 [ NCBI ]
CGAP (NCI)Hs.182626
Alternative Splicing GalleryENSG00000198792
Gene ExpressionTMEM184B [ NCBI-GEO ]   TMEM184B [ EBI - ARRAY_EXPRESS ]   TMEM184B [ SEEK ]   TMEM184B [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM184B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)25829
GTEX Portal (Tissue expression)TMEM184B
Human Protein AtlasENSG00000198792-TMEM184B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y519   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y519  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y519
Splice isoforms : SwissVarQ9Y519
PhosPhoSitePlusQ9Y519
Domains : Interpro (EBI)Ostalpha/TMEM184C   
Domain families : Pfam (Sanger)Solute_trans_a (PF03619)   
Domain families : Pfam (NCBI)pfam03619   
Conserved Domain (NCBI)TMEM184B
DMDM Disease mutations25829
Blocks (Seattle)TMEM184B
SuperfamilyQ9Y519
Human Protein Atlas [tissue]ENSG00000198792-TMEM184B [tissue]
Peptide AtlasQ9Y519
HPRD12801
IPIIPI00016853   IPI00892744   IPI00893160   IPI00893031   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y519
IntAct (EBI)Q9Y519
FunCoupENSG00000198792
BioGRIDTMEM184B
STRING (EMBL)TMEM184B
ZODIACTMEM184B
Ontologies - Pathways
QuickGOQ9Y519
Ontology : AmiGOtransporter activity  transport  integral component of membrane  
Ontology : EGO-EBItransporter activity  transport  integral component of membrane  
NDEx NetworkTMEM184B
Atlas of Cancer Signalling NetworkTMEM184B
Wikipedia pathwaysTMEM184B
Orthology - Evolution
OrthoDB25829
GeneTree (enSembl)ENSG00000198792
Phylogenetic Trees/Animal Genes : TreeFamTMEM184B
HOVERGENQ9Y519
HOGENOMQ9Y519
Homologs : HomoloGeneTMEM184B
Homology/Alignments : Family Browser (UCSC)TMEM184B
Gene fusions - Rearrangements
Fusion : MitelmanPLA2G6/TMEM184B [22q13.1/22q13.1]  [t(22;22)(q13;q13)]  
Fusion : MitelmanTMEM184B/RNF25 [22q13.1/2q35]  [t(2;22)(q35;q13)]  
Fusion: TCGAPLA2G6 22q13.1 TMEM184B 22q13.1 BRCA
Fusion: TCGATMEM184B 22q13.1 RNF25 2q35 BRCA
Fusion: Tumor Portal TMEM184B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM184B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM184B
dbVarTMEM184B
ClinVarTMEM184B
1000_GenomesTMEM184B 
Exome Variant ServerTMEM184B
ExAC (Exome Aggregation Consortium)ENSG00000198792
GNOMAD BrowserENSG00000198792
Genetic variants : HAPMAP25829
Genomic Variants (DGV)TMEM184B [DGVbeta]
DECIPHERTMEM184B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM184B 
Mutations
ICGC Data PortalTMEM184B 
TCGA Data PortalTMEM184B 
Broad Tumor PortalTMEM184B
OASIS PortalTMEM184B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM184B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM184B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM184B
DgiDB (Drug Gene Interaction Database)TMEM184B
DoCM (Curated mutations)TMEM184B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM184B (select a term)
intoGenTMEM184B
Cancer3DTMEM184B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTMEM184B
Genetic Testing Registry TMEM184B
NextProtQ9Y519 [Medical]
TSGene25829
GENETestsTMEM184B
Target ValidationTMEM184B
Huge Navigator TMEM184B [HugePedia]
snp3D : Map Gene to Disease25829
BioCentury BCIQTMEM184B
ClinGenTMEM184B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD25829
Chemical/Pharm GKB GenePA162406140
Clinical trialTMEM184B
Miscellaneous
canSAR (ICR)TMEM184B (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM184B
EVEXTMEM184B
GoPubMedTMEM184B
iHOPTMEM184B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 13:14:50 CET 2017

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