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TMEM184C (transmembrane protein 184C)

Identity

Alias_namesTMEM34
transmembrane protein 34
Alias_symbol (synonym)FLJ10846
Other alias
HGNC (Hugo) TMEM184C
LocusID (NCBI) 55751
Atlas_Id 47716
Location 4q31.23  [Link to chromosome band 4q31]
Location_base_pair Starts at 148538539 and ends at 148556672 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ARHGAP10 (4q31.23) / TMEM184C (4q31.23)NUDCD1 (8q23.1) / TMEM184C (4q31.23)TMEM184C (4q31.23) / ARHGAP10 (4q31.23)
TMEM184C (4q31.23) / GDE1 (16p12.3)ARHGAP10 4q31.23 / TMEM184C 4q31.23NUDCD1 8q23.1 / TMEM184C 4q31.23

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  Thyroid: Anaplastic (undifferentiated) carcinoma


External links

Nomenclature
HGNC (Hugo)TMEM184C   25587
Cards
Entrez_Gene (NCBI)TMEM184C  55751  transmembrane protein 184C
AliasesTMEM34
GeneCards (Weizmann)TMEM184C
Ensembl hg19 (Hinxton)ENSG00000164168 [Gene_View]  chr4:148538539-148556672 [Contig_View]  TMEM184C [Vega]
Ensembl hg38 (Hinxton)ENSG00000164168 [Gene_View]  chr4:148538539-148556672 [Contig_View]  TMEM184C [Vega]
ICGC DataPortalENSG00000164168
TCGA cBioPortalTMEM184C
AceView (NCBI)TMEM184C
Genatlas (Paris)TMEM184C
WikiGenes55751
SOURCE (Princeton)TMEM184C
Genetics Home Reference (NIH)TMEM184C
Genomic and cartography
GoldenPath hg19 (UCSC)TMEM184C  -     chr4:148538539-148556672 +  4q31.23   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TMEM184C  -     4q31.23   [Description]    (hg38-Dec_2013)
EnsemblTMEM184C - 4q31.23 [CytoView hg19]  TMEM184C - 4q31.23 [CytoView hg38]
Mapping of homologs : NCBITMEM184C [Mapview hg19]  TMEM184C [Mapview hg38]
OMIM613937   
Gene and transcription
Genbank (Entrez)AF305823 AK000169 AK001708 BC008120 BC046128
RefSeq transcript (Entrez)NM_018241
RefSeq genomic (Entrez)NC_000004 NC_018915 NT_016354 NW_004929320
Consensus coding sequences : CCDS (NCBI)TMEM184C
Cluster EST : UnigeneHs.203896 [ NCBI ]
CGAP (NCI)Hs.203896
Alternative Splicing GalleryENSG00000164168
Gene ExpressionTMEM184C [ NCBI-GEO ]   TMEM184C [ EBI - ARRAY_EXPRESS ]   TMEM184C [ SEEK ]   TMEM184C [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM184C [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55751
GTEX Portal (Tissue expression)TMEM184C
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NVA4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NVA4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NVA4
Splice isoforms : SwissVarQ9NVA4
PhosPhoSitePlusQ9NVA4
Domains : Interpro (EBI)Ostalpha/TMEM184C   
Domain families : Pfam (Sanger)Solute_trans_a (PF03619)   
Domain families : Pfam (NCBI)pfam03619   
Conserved Domain (NCBI)TMEM184C
DMDM Disease mutations55751
Blocks (Seattle)TMEM184C
SuperfamilyQ9NVA4
Human Protein AtlasENSG00000164168
Peptide AtlasQ9NVA4
HPRD07702
IPIIPI00019373   IPI00845297   IPI00967004   IPI00965099   
Protein Interaction databases
DIP (DOE-UCLA)Q9NVA4
IntAct (EBI)Q9NVA4
FunCoupENSG00000164168
BioGRIDTMEM184C
STRING (EMBL)TMEM184C
ZODIACTMEM184C
Ontologies - Pathways
QuickGOQ9NVA4
Ontology : AmiGOtransporter activity  transport  integral component of membrane  
Ontology : EGO-EBItransporter activity  transport  integral component of membrane  
NDEx NetworkTMEM184C
Atlas of Cancer Signalling NetworkTMEM184C
Wikipedia pathwaysTMEM184C
Orthology - Evolution
OrthoDB55751
GeneTree (enSembl)ENSG00000164168
Phylogenetic Trees/Animal Genes : TreeFamTMEM184C
HOVERGENQ9NVA4
HOGENOMQ9NVA4
Homologs : HomoloGeneTMEM184C
Homology/Alignments : Family Browser (UCSC)TMEM184C
Gene fusions - Rearrangements
Fusion : MitelmanARHGAP10/TMEM184C [4q31.23/4q31.23]  [t(4;4)(q31;q31)]  
Fusion : MitelmanNUDCD1/TMEM184C [8q23.1/4q31.23]  [t(4;8)(q31;q23)]  
Fusion: TCGAARHGAP10 4q31.23 TMEM184C 4q31.23 BLCA BRCA
Fusion: TCGANUDCD1 8q23.1 TMEM184C 4q31.23 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM184C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM184C
dbVarTMEM184C
ClinVarTMEM184C
1000_GenomesTMEM184C 
Exome Variant ServerTMEM184C
ExAC (Exome Aggregation Consortium)TMEM184C (select the gene name)
Genetic variants : HAPMAP55751
Genomic Variants (DGV)TMEM184C [DGVbeta]
DECIPHER (Syndromes)4:148538539-148556672  ENSG00000164168
CONAN: Copy Number AnalysisTMEM184C 
Mutations
ICGC Data PortalTMEM184C 
TCGA Data PortalTMEM184C 
Broad Tumor PortalTMEM184C
OASIS PortalTMEM184C [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM184C  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM184C
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM184C
DgiDB (Drug Gene Interaction Database)TMEM184C
DoCM (Curated mutations)TMEM184C (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM184C (select a term)
intoGenTMEM184C
Cancer3DTMEM184C(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613937   
Orphanet
MedgenTMEM184C
Genetic Testing Registry TMEM184C
NextProtQ9NVA4 [Medical]
TSGene55751
GENETestsTMEM184C
Huge Navigator TMEM184C [HugePedia]
snp3D : Map Gene to Disease55751
BioCentury BCIQTMEM184C
ClinGenTMEM184C
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55751
Chemical/Pharm GKB GenePA162406163
Clinical trialTMEM184C
Miscellaneous
canSAR (ICR)TMEM184C (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM184C
EVEXTMEM184C
GoPubMedTMEM184C
iHOPTMEM184C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:31:27 CET 2017

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