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TMEM185A (transmembrane protein 185A)

Identity

Alias_namesCXorf13
FAM11A
chromosome X open reading frame 13
family with sequence similarity 11, member A
Alias_symbol (synonym)FRAXF
Other aliasee3
HGNC (Hugo) TMEM185A
LocusID (NCBI) 84548
Atlas_Id 74850
Location Xq28  [Link to chromosome band Xq28]
Location_base_pair Starts at 149596556 and ends at 149631912 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
TMEM185A (Xq28) / APRT (16q24.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM185A   17125
Cards
Entrez_Gene (NCBI)TMEM185A  84548  transmembrane protein 185A
AliasesCXorf13; FAM11A; FRAXF; ee3
GeneCards (Weizmann)TMEM185A
Ensembl hg19 (Hinxton)ENSG00000269556 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000269556 [Gene_View]  chrX:149596556-149631912 [Contig_View]  TMEM185A [Vega]
ICGC DataPortalENSG00000269556
TCGA cBioPortalTMEM185A
AceView (NCBI)TMEM185A
Genatlas (Paris)TMEM185A
WikiGenes84548
SOURCE (Princeton)TMEM185A
Genetics Home Reference (NIH)TMEM185A
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM185A  -     chrX:149596556-149631912 -  Xq28   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM185A  -     Xq28   [Description]    (hg19-Feb_2009)
EnsemblTMEM185A - Xq28 [CytoView hg19]  TMEM185A - Xq28 [CytoView hg38]
Mapping of homologs : NCBITMEM185A [Mapview hg19]  TMEM185A [Mapview hg38]
OMIM300031   
Gene and transcription
Genbank (Entrez)AF353675 AF530473 AK096308 AK097391 AK128688
RefSeq transcript (Entrez)NM_001174092 NM_001282302 NM_032508
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMEM185A
Cluster EST : UnigeneHs.522172 [ NCBI ]
CGAP (NCI)Hs.522172
Alternative Splicing GalleryENSG00000269556
Gene ExpressionTMEM185A [ NCBI-GEO ]   TMEM185A [ EBI - ARRAY_EXPRESS ]   TMEM185A [ SEEK ]   TMEM185A [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM185A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84548
GTEX Portal (Tissue expression)TMEM185A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NFB2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NFB2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NFB2
Splice isoforms : SwissVarQ8NFB2
PhosPhoSitePlusQ8NFB2
Domains : Interpro (EBI)TM_Fragile-X-F-assoc   
Domain families : Pfam (Sanger)Tmemb_185A (PF10269)   
Domain families : Pfam (NCBI)pfam10269   
Conserved Domain (NCBI)TMEM185A
DMDM Disease mutations84548
Blocks (Seattle)TMEM185A
SuperfamilyQ8NFB2
Human Protein AtlasENSG00000269556
Peptide AtlasQ8NFB2
HPRD06504
IPIIPI00168815   IPI00984182   IPI00973969   IPI00976064   IPI01018617   IPI00973996   IPI00956203   
Protein Interaction databases
DIP (DOE-UCLA)Q8NFB2
IntAct (EBI)Q8NFB2
FunCoupENSG00000269556
BioGRIDTMEM185A
STRING (EMBL)TMEM185A
ZODIACTMEM185A
Ontologies - Pathways
QuickGOQ8NFB2
Ontology : AmiGOprotein binding  integral component of membrane  dendrite  
Ontology : EGO-EBIprotein binding  integral component of membrane  dendrite  
NDEx NetworkTMEM185A
Atlas of Cancer Signalling NetworkTMEM185A
Wikipedia pathwaysTMEM185A
Orthology - Evolution
OrthoDB84548
GeneTree (enSembl)ENSG00000269556
Phylogenetic Trees/Animal Genes : TreeFamTMEM185A
HOVERGENQ8NFB2
HOGENOMQ8NFB2
Homologs : HomoloGeneTMEM185A
Homology/Alignments : Family Browser (UCSC)TMEM185A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM185A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM185A
dbVarTMEM185A
ClinVarTMEM185A
1000_GenomesTMEM185A 
Exome Variant ServerTMEM185A
ExAC (Exome Aggregation Consortium)TMEM185A (select the gene name)
Genetic variants : HAPMAP84548
Genomic Variants (DGV)TMEM185A [DGVbeta]
DECIPHERTMEM185A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM185A 
Mutations
ICGC Data PortalTMEM185A 
TCGA Data PortalTMEM185A 
Broad Tumor PortalTMEM185A
OASIS PortalTMEM185A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM185A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM185A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM185A
DgiDB (Drug Gene Interaction Database)TMEM185A
DoCM (Curated mutations)TMEM185A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM185A (select a term)
intoGenTMEM185A
Cancer3DTMEM185A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300031   
Orphanet14685   
MedgenTMEM185A
Genetic Testing Registry TMEM185A
NextProtQ8NFB2 [Medical]
TSGene84548
GENETestsTMEM185A
Target ValidationTMEM185A
Huge Navigator TMEM185A [HugePedia]
snp3D : Map Gene to Disease84548
BioCentury BCIQTMEM185A
ClinGenTMEM185A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84548
Chemical/Pharm GKB GenePA27062
Clinical trialTMEM185A
Miscellaneous
canSAR (ICR)TMEM185A (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM185A
EVEXTMEM185A
GoPubMedTMEM185A
iHOPTMEM185A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:46:02 CEST 2017

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