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TMEM185B (transmembrane protein 185B)

Identity

Alias_namesFAM11B
family with sequence similarity 11, member B
transmembrane protein 185B (pseudogene)
Alias_symbol (synonym)FLJ20979
Other alias
HGNC (Hugo) TMEM185B
LocusID (NCBI) 79134
Atlas_Id 74851
Location 2q14.2  [Link to chromosome band 2q14]
Location_base_pair Starts at 120217471 and ends at 120223408 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TMEM185B (2q14.2) / SCRIB (8q24.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM185B   18896
Cards
Entrez_Gene (NCBI)TMEM185B  79134  transmembrane protein 185B
AliasesFAM11B
GeneCards (Weizmann)TMEM185B
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr2:120217471-120223408 [Contig_View]  TMEM185B [Vega]
TCGA cBioPortalTMEM185B
AceView (NCBI)TMEM185B
Genatlas (Paris)TMEM185B
WikiGenes79134
SOURCE (Princeton)TMEM185B
Genetics Home Reference (NIH)TMEM185B
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM185B  -     chr2:120217471-120223408 -  2q14.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM185B  -     2q14.2   [Description]    (hg19-Feb_2009)
EnsemblTMEM185B - 2q14.2 [CytoView hg19]  TMEM185B - 2q14.2 [CytoView hg38]
Mapping of homologs : NCBITMEM185B [Mapview hg19]  TMEM185B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF530474 AK021716 AK024632 AK090980 AK289880
RefSeq transcript (Entrez)NM_024121
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMEM185B
Cluster EST : UnigeneHs.376722 [ NCBI ]
CGAP (NCI)Hs.376722
Gene ExpressionTMEM185B [ NCBI-GEO ]   TMEM185B [ EBI - ARRAY_EXPRESS ]   TMEM185B [ SEEK ]   TMEM185B [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM185B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79134
GTEX Portal (Tissue expression)TMEM185B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H7F4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H7F4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H7F4
Splice isoforms : SwissVarQ9H7F4
PhosPhoSitePlusQ9H7F4
Domains : Interpro (EBI)TM_Fragile-X-F-assoc   
Domain families : Pfam (Sanger)Tmemb_185A (PF10269)   
Domain families : Pfam (NCBI)pfam10269   
Conserved Domain (NCBI)TMEM185B
DMDM Disease mutations79134
Blocks (Seattle)TMEM185B
SuperfamilyQ9H7F4
Peptide AtlasQ9H7F4
IPIIPI00433826   
Protein Interaction databases
DIP (DOE-UCLA)Q9H7F4
IntAct (EBI)Q9H7F4
BioGRIDTMEM185B
STRING (EMBL)TMEM185B
ZODIACTMEM185B
Ontologies - Pathways
QuickGOQ9H7F4
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkTMEM185B
Atlas of Cancer Signalling NetworkTMEM185B
Wikipedia pathwaysTMEM185B
Orthology - Evolution
OrthoDB79134
Phylogenetic Trees/Animal Genes : TreeFamTMEM185B
HOVERGENQ9H7F4
HOGENOMQ9H7F4
Homologs : HomoloGeneTMEM185B
Homology/Alignments : Family Browser (UCSC)TMEM185B
Gene fusions - Rearrangements
Tumor Fusion PortalTMEM185B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM185B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM185B
dbVarTMEM185B
ClinVarTMEM185B
1000_GenomesTMEM185B 
Exome Variant ServerTMEM185B
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP79134
Genomic Variants (DGV)TMEM185B [DGVbeta]
DECIPHERTMEM185B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM185B 
Mutations
ICGC Data PortalTMEM185B 
TCGA Data PortalTMEM185B 
Broad Tumor PortalTMEM185B
OASIS PortalTMEM185B [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTMEM185B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM185B
DgiDB (Drug Gene Interaction Database)TMEM185B
DoCM (Curated mutations)TMEM185B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM185B (select a term)
intoGenTMEM185B
Cancer3DTMEM185B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTMEM185B
MedgenTMEM185B
Genetic Testing Registry TMEM185B
NextProtQ9H7F4 [Medical]
TSGene79134
GENETestsTMEM185B
Target ValidationTMEM185B
Huge Navigator TMEM185B [HugePedia]
snp3D : Map Gene to Disease79134
BioCentury BCIQTMEM185B
ClinGenTMEM185B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79134
Chemical/Pharm GKB GenePA166048952
Clinical trialTMEM185B
Miscellaneous
canSAR (ICR)TMEM185B (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM185B
EVEXTMEM185B
GoPubMedTMEM185B
iHOPTMEM185B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:06:39 CET 2017

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