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TMEM186 (transmembrane protein 186)

Identity

Alias_namesC16orf51
chromosome 16 open reading frame 51
Alias_symbol (synonym)DKFZP564K2062
Other alias
HGNC (Hugo) TMEM186
LocusID (NCBI) 25880
Atlas_Id 74852
Location 16p13.2  [Link to chromosome band 16p13]
Location_base_pair Starts at 8795180 and ends at 8797648 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM186   24530
Cards
Entrez_Gene (NCBI)TMEM186  25880  transmembrane protein 186
AliasesC16orf51
GeneCards (Weizmann)TMEM186
Ensembl hg19 (Hinxton)ENSG00000184857 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000184857 [Gene_View]  chr16:8795180-8797648 [Contig_View]  TMEM186 [Vega]
ICGC DataPortalENSG00000184857
TCGA cBioPortalTMEM186
AceView (NCBI)TMEM186
Genatlas (Paris)TMEM186
WikiGenes25880
SOURCE (Princeton)TMEM186
Genetics Home Reference (NIH)TMEM186
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM186  -     chr16:8795180-8797648 -  16p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM186  -     16p13.2   [Description]    (hg19-Feb_2009)
EnsemblTMEM186 - 16p13.2 [CytoView hg19]  TMEM186 - 16p13.2 [CytoView hg38]
Mapping of homologs : NCBITMEM186 [Mapview hg19]  TMEM186 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK093383 AK225638 AK314404 AL080088 BC015912
RefSeq transcript (Entrez)NM_015421
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMEM186
Cluster EST : UnigeneHs.513330 [ NCBI ]
CGAP (NCI)Hs.513330
Alternative Splicing GalleryENSG00000184857
Gene ExpressionTMEM186 [ NCBI-GEO ]   TMEM186 [ EBI - ARRAY_EXPRESS ]   TMEM186 [ SEEK ]   TMEM186 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM186 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)25880
GTEX Portal (Tissue expression)TMEM186
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96B77   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96B77  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96B77
Splice isoforms : SwissVarQ96B77
PhosPhoSitePlusQ96B77
Domains : Interpro (EBI)Tmem186   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TMEM186
DMDM Disease mutations25880
Blocks (Seattle)TMEM186
SuperfamilyQ96B77
Human Protein AtlasENSG00000184857
Peptide AtlasQ96B77
HPRD08527
IPIIPI00303290   
Protein Interaction databases
DIP (DOE-UCLA)Q96B77
IntAct (EBI)Q96B77
FunCoupENSG00000184857
BioGRIDTMEM186
STRING (EMBL)TMEM186
ZODIACTMEM186
Ontologies - Pathways
QuickGOQ96B77
Ontology : AmiGOmitochondrion  integral component of membrane  
Ontology : EGO-EBImitochondrion  integral component of membrane  
NDEx NetworkTMEM186
Atlas of Cancer Signalling NetworkTMEM186
Wikipedia pathwaysTMEM186
Orthology - Evolution
OrthoDB25880
GeneTree (enSembl)ENSG00000184857
Phylogenetic Trees/Animal Genes : TreeFamTMEM186
HOVERGENQ96B77
HOGENOMQ96B77
Homologs : HomoloGeneTMEM186
Homology/Alignments : Family Browser (UCSC)TMEM186
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM186 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM186
dbVarTMEM186
ClinVarTMEM186
1000_GenomesTMEM186 
Exome Variant ServerTMEM186
ExAC (Exome Aggregation Consortium)TMEM186 (select the gene name)
Genetic variants : HAPMAP25880
Genomic Variants (DGV)TMEM186 [DGVbeta]
DECIPHERTMEM186 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM186 
Mutations
ICGC Data PortalTMEM186 
TCGA Data PortalTMEM186 
Broad Tumor PortalTMEM186
OASIS PortalTMEM186 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM186  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM186
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM186
DgiDB (Drug Gene Interaction Database)TMEM186
DoCM (Curated mutations)TMEM186 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM186 (select a term)
intoGenTMEM186
Cancer3DTMEM186(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTMEM186
Genetic Testing Registry TMEM186
NextProtQ96B77 [Medical]
TSGene25880
GENETestsTMEM186
Target ValidationTMEM186
Huge Navigator TMEM186 [HugePedia]
snp3D : Map Gene to Disease25880
BioCentury BCIQTMEM186
ClinGenTMEM186
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD25880
Chemical/Pharm GKB GenePA162406190
Clinical trialTMEM186
Miscellaneous
canSAR (ICR)TMEM186 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM186
EVEXTMEM186
GoPubMedTMEM186
iHOPTMEM186
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:46:02 CEST 2017

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