Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TMEM187 (transmembrane protein 187)

Identity

Alias_namesCXorf12
chromosome X open reading frame 12
Alias_symbol (synonym)ITBA1
DXS9878E
Other alias
HGNC (Hugo) TMEM187
LocusID (NCBI) 8269
Atlas_Id 74853
Location Xq28  [Link to chromosome band Xq28]
Location_base_pair Starts at 153972540 and ends at 153983195 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM187   13705
Cards
Entrez_Gene (NCBI)TMEM187  8269  transmembrane protein 187
AliasesCXorf12; DXS9878E; ITBA1
GeneCards (Weizmann)TMEM187
Ensembl hg19 (Hinxton)ENSG00000177854 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000177854 [Gene_View]  chrX:153972540-153983195 [Contig_View]  TMEM187 [Vega]
ICGC DataPortalENSG00000177854
TCGA cBioPortalTMEM187
AceView (NCBI)TMEM187
Genatlas (Paris)TMEM187
WikiGenes8269
SOURCE (Princeton)TMEM187
Genetics Home Reference (NIH)TMEM187
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM187  -     chrX:153972540-153983195 +  Xq28   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM187  -     Xq28   [Description]    (hg19-Feb_2009)
EnsemblTMEM187 - Xq28 [CytoView hg19]  TMEM187 - Xq28 [CytoView hg38]
Mapping of homologs : NCBITMEM187 [Mapview hg19]  TMEM187 [Mapview hg38]
OMIM300059   
Gene and transcription
Genbank (Entrez)AI355489 AK314938 BC008203 BC017026 CR457047
RefSeq transcript (Entrez)NM_003492
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMEM187
Cluster EST : UnigeneHs.23119 [ NCBI ]
CGAP (NCI)Hs.23119
Alternative Splicing GalleryENSG00000177854
Gene ExpressionTMEM187 [ NCBI-GEO ]   TMEM187 [ EBI - ARRAY_EXPRESS ]   TMEM187 [ SEEK ]   TMEM187 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM187 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8269
GTEX Portal (Tissue expression)TMEM187
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ14656   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ14656  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ14656
Splice isoforms : SwissVarQ14656
PhosPhoSitePlusQ14656
Domains : Interpro (EBI)TMEM187   
Domain families : Pfam (Sanger)TMEM187 (PF15100)   
Domain families : Pfam (NCBI)pfam15100   
Conserved Domain (NCBI)TMEM187
DMDM Disease mutations8269
Blocks (Seattle)TMEM187
SuperfamilyQ14656
Human Protein AtlasENSG00000177854
Peptide AtlasQ14656
HPRD02086
IPIIPI00032310   IPI00658001   IPI00792826   
Protein Interaction databases
DIP (DOE-UCLA)Q14656
IntAct (EBI)Q14656
FunCoupENSG00000177854
BioGRIDTMEM187
STRING (EMBL)TMEM187
ZODIACTMEM187
Ontologies - Pathways
QuickGOQ14656
Ontology : AmiGOmolecular_function  biological_process  integral component of membrane  transport vesicle  
Ontology : EGO-EBImolecular_function  biological_process  integral component of membrane  transport vesicle  
NDEx NetworkTMEM187
Atlas of Cancer Signalling NetworkTMEM187
Wikipedia pathwaysTMEM187
Orthology - Evolution
OrthoDB8269
GeneTree (enSembl)ENSG00000177854
Phylogenetic Trees/Animal Genes : TreeFamTMEM187
HOVERGENQ14656
HOGENOMQ14656
Homologs : HomoloGeneTMEM187
Homology/Alignments : Family Browser (UCSC)TMEM187
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM187 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM187
dbVarTMEM187
ClinVarTMEM187
1000_GenomesTMEM187 
Exome Variant ServerTMEM187
ExAC (Exome Aggregation Consortium)TMEM187 (select the gene name)
Genetic variants : HAPMAP8269
Genomic Variants (DGV)TMEM187 [DGVbeta]
DECIPHERTMEM187 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM187 
Mutations
ICGC Data PortalTMEM187 
TCGA Data PortalTMEM187 
Broad Tumor PortalTMEM187
OASIS PortalTMEM187 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM187  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM187
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch TMEM187
DgiDB (Drug Gene Interaction Database)TMEM187
DoCM (Curated mutations)TMEM187 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM187 (select a term)
intoGenTMEM187
Cancer3DTMEM187(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300059   
Orphanet
MedgenTMEM187
Genetic Testing Registry TMEM187
NextProtQ14656 [Medical]
TSGene8269
GENETestsTMEM187
Target ValidationTMEM187
Huge Navigator TMEM187 [HugePedia]
snp3D : Map Gene to Disease8269
BioCentury BCIQTMEM187
ClinGenTMEM187
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8269
Chemical/Pharm GKB GenePA162406199
Clinical trialTMEM187
Miscellaneous
canSAR (ICR)TMEM187 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM187
EVEXTMEM187
GoPubMedTMEM187
iHOPTMEM187
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:41:47 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.