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TMEM19 (transmembrane protein 19)

Identity

Alias (NCBI)-
HGNC (Hugo) TMEM19
HGNC Alias symbFLJ10936
LocusID (NCBI) 55266
Atlas_Id 74855
Location 12q21.1  [Link to chromosome band 12q21]
Location_base_pair Starts at 71686082 and ends at 71705047 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TMEM19 (12q21.1) / TSPAN8 (12q21.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TMEM19   25605
Cards
Entrez_Gene (NCBI)TMEM19    transmembrane protein 19
Aliases
GeneCards (Weizmann)TMEM19
Ensembl hg19 (Hinxton)ENSG00000139291 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000139291 [Gene_View]  ENSG00000139291 [Sequence]  chr12:71686082-71705047 [Contig_View]  TMEM19 [Vega]
ICGC DataPortalENSG00000139291
TCGA cBioPortalTMEM19
AceView (NCBI)TMEM19
Genatlas (Paris)TMEM19
SOURCE (Princeton)TMEM19
Genetics Home Reference (NIH)TMEM19
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM19  -     chr12:71686082-71705047 +  12q21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM19  -     12q21.1   [Description]    (hg19-Feb_2009)
GoldenPathTMEM19 - 12q21.1 [CytoView hg19]  TMEM19 - 12q21.1 [CytoView hg38]
ImmunoBaseENSG00000139291
Genome Data Viewer NCBITMEM19 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK001798 AK025839 AK223148 AK315587 BC008596
RefSeq transcript (Entrez)NM_018279
Consensus coding sequences : CCDS (NCBI)TMEM19
Gene ExpressionTMEM19 [ NCBI-GEO ]   TMEM19 [ EBI - ARRAY_EXPRESS ]   TMEM19 [ SEEK ]   TMEM19 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM19 [ Firebrowse - Broad ]
GenevisibleExpression of TMEM19 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55266
GTEX Portal (Tissue expression)TMEM19
Human Protein AtlasENSG00000139291-TMEM19 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96HH6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96HH6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96HH6
PhosPhoSitePlusQ96HH6
Domains : Interpro (EBI)DUF92_TMEM19   
Domain families : Pfam (Sanger)DUF92 (PF01940)   
Domain families : Pfam (NCBI)pfam01940   
Conserved Domain (NCBI)TMEM19
SuperfamilyQ96HH6
AlphaFold pdb e-kbQ96HH6   
Human Protein Atlas [tissue]ENSG00000139291-TMEM19 [tissue]
HPRD15530
Protein Interaction databases
DIP (DOE-UCLA)Q96HH6
IntAct (EBI)Q96HH6
BioGRIDTMEM19
STRING (EMBL)TMEM19
ZODIACTMEM19
Ontologies - Pathways
QuickGOQ96HH6
Ontology : AmiGOprotein binding  membrane  integral component of membrane  
Ontology : EGO-EBIprotein binding  membrane  integral component of membrane  
NDEx NetworkTMEM19
Atlas of Cancer Signalling NetworkTMEM19
Wikipedia pathwaysTMEM19
Orthology - Evolution
OrthoDB55266
GeneTree (enSembl)ENSG00000139291
Phylogenetic Trees/Animal Genes : TreeFamTMEM19
Homologs : HomoloGeneTMEM19
Homology/Alignments : Family Browser (UCSC)TMEM19
Gene fusions - Rearrangements
Fusion : QuiverTMEM19
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM19 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM19
dbVarTMEM19
ClinVarTMEM19
MonarchTMEM19
1000_GenomesTMEM19 
Exome Variant ServerTMEM19
GNOMAD BrowserENSG00000139291
Varsome BrowserTMEM19
ACMGTMEM19 variants
VarityQ96HH6
Genomic Variants (DGV)TMEM19 [DGVbeta]
DECIPHERTMEM19 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM19 
Mutations
ICGC Data PortalTMEM19 
TCGA Data PortalTMEM19 
Broad Tumor PortalTMEM19
OASIS PortalTMEM19 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM19  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTMEM19
Mutations and Diseases : HGMDTMEM19
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTMEM19
DgiDB (Drug Gene Interaction Database)TMEM19
DoCM (Curated mutations)TMEM19
CIViC (Clinical Interpretations of Variants in Cancer)TMEM19
Cancer3DTMEM19
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTMEM19
MedgenTMEM19
Genetic Testing Registry TMEM19
NextProtQ96HH6 [Medical]
GENETestsTMEM19
Target ValidationTMEM19
Huge Navigator TMEM19 [HugePedia]
ClinGenTMEM19
Clinical trials, drugs, therapy
MyCancerGenomeTMEM19
Protein Interactions : CTDTMEM19
Pharm GKB GenePA134909388
PharosQ96HH6
Clinical trialTMEM19
Miscellaneous
canSAR (ICR)TMEM19
HarmonizomeTMEM19
DataMed IndexTMEM19
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTMEM19
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 16:25:57 CEST 2021

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