Atlas of Genetics and Cytogenetics in Oncology and Haematology


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TMEM19 (transmembrane protein 19)

Identity

Alias_symbol (synonym)FLJ10936
Other alias-
HGNC (Hugo) TMEM19
LocusID (NCBI) 55266
Atlas_Id 74855
Location 12q21.1  [Link to chromosome band 12q21]
Location_base_pair Starts at 71686098 and ends at 71704059 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
TMEM19 (12q21.1) / TSPAN8 (12q21.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM19   25605
Cards
Entrez_Gene (NCBI)TMEM19  55266  transmembrane protein 19
Aliases
GeneCards (Weizmann)TMEM19
Ensembl hg19 (Hinxton)ENSG00000139291 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000139291 [Gene_View]  chr12:71686098-71704059 [Contig_View]  TMEM19 [Vega]
ICGC DataPortalENSG00000139291
TCGA cBioPortalTMEM19
AceView (NCBI)TMEM19
Genatlas (Paris)TMEM19
WikiGenes55266
SOURCE (Princeton)TMEM19
Genetics Home Reference (NIH)TMEM19
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM19  -     chr12:71686098-71704059 +  12q21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM19  -     12q21.1   [Description]    (hg19-Feb_2009)
EnsemblTMEM19 - 12q21.1 [CytoView hg19]  TMEM19 - 12q21.1 [CytoView hg38]
Mapping of homologs : NCBITMEM19 [Mapview hg19]  TMEM19 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK001798 AK025839 AK223148 AK315587 BC008596
RefSeq transcript (Entrez)NM_018279
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMEM19
Cluster EST : UnigeneHs.644802 [ NCBI ]
CGAP (NCI)Hs.644802
Alternative Splicing GalleryENSG00000139291
Gene ExpressionTMEM19 [ NCBI-GEO ]   TMEM19 [ EBI - ARRAY_EXPRESS ]   TMEM19 [ SEEK ]   TMEM19 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM19 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55266
GTEX Portal (Tissue expression)TMEM19
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96HH6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96HH6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96HH6
Splice isoforms : SwissVarQ96HH6
PhosPhoSitePlusQ96HH6
Domains : Interpro (EBI)DUF92_TMEM19   
Domain families : Pfam (Sanger)DUF92 (PF01940)   
Domain families : Pfam (NCBI)pfam01940   
Conserved Domain (NCBI)TMEM19
DMDM Disease mutations55266
Blocks (Seattle)TMEM19
SuperfamilyQ96HH6
Human Protein AtlasENSG00000139291
Peptide AtlasQ96HH6
HPRD15530
IPIIPI00153036   IPI00749138   IPI01022700   IPI01022256   IPI01022403   IPI01021319   
Protein Interaction databases
DIP (DOE-UCLA)Q96HH6
IntAct (EBI)Q96HH6
FunCoupENSG00000139291
BioGRIDTMEM19
STRING (EMBL)TMEM19
ZODIACTMEM19
Ontologies - Pathways
QuickGOQ96HH6
Ontology : AmiGOprotein binding  membrane  integral component of membrane  
Ontology : EGO-EBIprotein binding  membrane  integral component of membrane  
NDEx NetworkTMEM19
Atlas of Cancer Signalling NetworkTMEM19
Wikipedia pathwaysTMEM19
Orthology - Evolution
OrthoDB55266
GeneTree (enSembl)ENSG00000139291
Phylogenetic Trees/Animal Genes : TreeFamTMEM19
HOVERGENQ96HH6
HOGENOMQ96HH6
Homologs : HomoloGeneTMEM19
Homology/Alignments : Family Browser (UCSC)TMEM19
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM19 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM19
dbVarTMEM19
ClinVarTMEM19
1000_GenomesTMEM19 
Exome Variant ServerTMEM19
ExAC (Exome Aggregation Consortium)TMEM19 (select the gene name)
Genetic variants : HAPMAP55266
Genomic Variants (DGV)TMEM19 [DGVbeta]
DECIPHERTMEM19 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM19 
Mutations
ICGC Data PortalTMEM19 
TCGA Data PortalTMEM19 
Broad Tumor PortalTMEM19
OASIS PortalTMEM19 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM19  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM19
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM19
DgiDB (Drug Gene Interaction Database)TMEM19
DoCM (Curated mutations)TMEM19 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM19 (select a term)
intoGenTMEM19
Cancer3DTMEM19(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTMEM19
Genetic Testing Registry TMEM19
NextProtQ96HH6 [Medical]
TSGene55266
GENETestsTMEM19
Target ValidationTMEM19
Huge Navigator TMEM19 [HugePedia]
snp3D : Map Gene to Disease55266
BioCentury BCIQTMEM19
ClinGenTMEM19
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55266
Chemical/Pharm GKB GenePA134909388
Clinical trialTMEM19
Miscellaneous
canSAR (ICR)TMEM19 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM19
EVEXTMEM19
GoPubMedTMEM19
iHOPTMEM19
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:41:48 CEST 2017

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