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TMEM196 (transmembrane protein 196)

Identity

Alias (NCBI)-
HGNC (Hugo) TMEM196
HGNC Alias symbMGC42090
LocusID (NCBI) 256130
Atlas_Id 55826
Location 7p21.1  [Link to chromosome band 7p21]
Location_base_pair Starts at 19719315 and ends at 19772781 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TMEM196   22431
Cards
Entrez_Gene (NCBI)TMEM196    transmembrane protein 196
Aliases
GeneCards (Weizmann)TMEM196
Ensembl hg19 (Hinxton)ENSG00000173452 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000173452 [Gene_View]  ENSG00000173452 [Sequence]  chr7:19719315-19772781 [Contig_View]  TMEM196 [Vega]
ICGC DataPortalENSG00000173452
TCGA cBioPortalTMEM196
AceView (NCBI)TMEM196
Genatlas (Paris)TMEM196
SOURCE (Princeton)TMEM196
Genetics Home Reference (NIH)TMEM196
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM196  -     chr7:19719315-19772781 -  7p21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM196  -     7p21.1   [Description]    (hg19-Feb_2009)
GoldenPathTMEM196 - 7p21.1 [CytoView hg19]  TMEM196 - 7p21.1 [CytoView hg38]
ImmunoBaseENSG00000173452
Genome Data Viewer NCBITMEM196 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)BC030104 BG197605 BX647256 BX648384 CK823401
RefSeq transcript (Entrez)NM_001363562 NM_001366625 NM_001366626 NM_001366627 NM_001366628 NM_152774
Consensus coding sequences : CCDS (NCBI)TMEM196
Gene ExpressionTMEM196 [ NCBI-GEO ]   TMEM196 [ EBI - ARRAY_EXPRESS ]   TMEM196 [ SEEK ]   TMEM196 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM196 [ Firebrowse - Broad ]
GenevisibleExpression of TMEM196 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)256130
GTEX Portal (Tissue expression)TMEM196
Human Protein AtlasENSG00000173452-TMEM196 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5HYL7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5HYL7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5HYL7
PhosPhoSitePlusQ5HYL7
Domains : Interpro (EBI)TMEM196   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TMEM196
SuperfamilyQ5HYL7
AlphaFold pdb e-kbQ5HYL7   
Human Protein Atlas [tissue]ENSG00000173452-TMEM196 [tissue]
HPRD14617
Protein Interaction databases
DIP (DOE-UCLA)Q5HYL7
IntAct (EBI)Q5HYL7
BioGRIDTMEM196
STRING (EMBL)TMEM196
ZODIACTMEM196
Ontologies - Pathways
QuickGOQ5HYL7
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkTMEM196
Atlas of Cancer Signalling NetworkTMEM196
Wikipedia pathwaysTMEM196
Orthology - Evolution
OrthoDB256130
GeneTree (enSembl)ENSG00000173452
Phylogenetic Trees/Animal Genes : TreeFamTMEM196
Homologs : HomoloGeneTMEM196
Homology/Alignments : Family Browser (UCSC)TMEM196
Gene fusions - Rearrangements
Fusion : QuiverTMEM196
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM196 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM196
dbVarTMEM196
ClinVarTMEM196
MonarchTMEM196
1000_GenomesTMEM196 
Exome Variant ServerTMEM196
GNOMAD BrowserENSG00000173452
Varsome BrowserTMEM196
ACMGTMEM196 variants
VarityQ5HYL7
Genomic Variants (DGV)TMEM196 [DGVbeta]
DECIPHERTMEM196 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM196 
Mutations
ICGC Data PortalTMEM196 
TCGA Data PortalTMEM196 
Broad Tumor PortalTMEM196
OASIS PortalTMEM196 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM196  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTMEM196
Mutations and Diseases : HGMDTMEM196
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTMEM196
DgiDB (Drug Gene Interaction Database)TMEM196
DoCM (Curated mutations)TMEM196
CIViC (Clinical Interpretations of Variants in Cancer)TMEM196
Cancer3DTMEM196
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTMEM196
MedgenTMEM196
Genetic Testing Registry TMEM196
NextProtQ5HYL7 [Medical]
GENETestsTMEM196
Target ValidationTMEM196
Huge Navigator TMEM196 [HugePedia]
ClinGenTMEM196
Clinical trials, drugs, therapy
MyCancerGenomeTMEM196
Protein Interactions : CTDTMEM196
Pharm GKB GenePA162406335
PharosQ5HYL7
Clinical trialTMEM196
Miscellaneous
canSAR (ICR)TMEM196
HarmonizomeTMEM196
DataMed IndexTMEM196
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTMEM196
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:35:28 CEST 2021

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