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TMEM196 (transmembrane protein 196)

Identity

Alias_symbol (synonym)MGC42090
Other alias-
HGNC (Hugo) TMEM196
LocusID (NCBI) 256130
Atlas_Id 55826
Location 7p21.1  [Link to chromosome band 7p21]
Location_base_pair Starts at 19719315 and ends at 19772781 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

>TR>Genatlas (Paris)
Nomenclature
HGNC (Hugo)TMEM196   22431
Cards
Entrez_Gene (NCBI)TMEM196  256130  transmembrane protein 196
Aliases
GeneCards (Weizmann)TMEM196
Ensembl hg19 (Hinxton)ENSG00000173452 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000173452 [Gene_View]  chr7:19719315-19772781 [Contig_View]  TMEM196 [Vega]
ICGC DataPortalENSG00000173452
TCGA cBioPortalTMEM196
AceView (NCBI)TMEM196
TMEM196
WikiGenes256130
SOURCE (Princeton)TMEM196
Genetics Home Reference (NIH)TMEM196
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM196  -     chr7:19719315-19772781 -  7p21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM196  -     7p21.1   [Description]    (hg19-Feb_2009)
EnsemblTMEM196 - 7p21.1 [CytoView hg19]  TMEM196 - 7p21.1 [CytoView hg38]
Mapping of homologs : NCBITMEM196 [Mapview hg19]  TMEM196 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC030104 BX647256 BX648384 DN991960
RefSeq transcript (Entrez)NM_152774
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMEM196
Cluster EST : UnigeneHs.487670 [ NCBI ]
CGAP (NCI)Hs.487670
Alternative Splicing GalleryENSG00000173452
Gene ExpressionTMEM196 [ NCBI-GEO ]   TMEM196 [ EBI - ARRAY_EXPRESS ]   TMEM196 [ SEEK ]   TMEM196 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM196 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)256130
GTEX Portal (Tissue expression)TMEM196
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5HYL7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5HYL7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5HYL7
Splice isoforms : SwissVarQ5HYL7
PhosPhoSitePlusQ5HYL7
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TMEM196
DMDM Disease mutations256130
Blocks (Seattle)TMEM196
SuperfamilyQ5HYL7
Human Protein AtlasENSG00000173452
Peptide AtlasQ5HYL7
HPRD14617
IPIIPI00884964   IPI00175152   IPI00966010   IPI00894168   IPI00884983   
Protein Interaction databases
DIP (DOE-UCLA)Q5HYL7
IntAct (EBI)Q5HYL7
FunCoupENSG00000173452
BioGRIDTMEM196
STRING (EMBL)TMEM196
ZODIACTMEM196
Ontologies - Pathways
QuickGOQ5HYL7
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkTMEM196
Atlas of Cancer Signalling NetworkTMEM196
Wikipedia pathwaysTMEM196
Orthology - Evolution
OrthoDB256130
GeneTree (enSembl)ENSG00000173452
Phylogenetic Trees/Animal Genes : TreeFamTMEM196
HOVERGENQ5HYL7
HOGENOMQ5HYL7
Homologs : HomoloGeneTMEM196
Homology/Alignments : Family Browser (UCSC)TMEM196
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM196 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM196
dbVarTMEM196
ClinVarTMEM196
1000_GenomesTMEM196 
Exome Variant ServerTMEM196
ExAC (Exome Aggregation Consortium)TMEM196 (select the gene name)
Genetic variants : HAPMAP256130
Genomic Variants (DGV)TMEM196 [DGVbeta]
DECIPHERTMEM196 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM196 
Mutations
ICGC Data PortalTMEM196 
TCGA Data PortalTMEM196 
Broad Tumor PortalTMEM196
OASIS PortalTMEM196 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM196  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM196
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM196
DgiDB (Drug Gene Interaction Database)TMEM196
DoCM (Curated mutations)TMEM196 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM196 (select a term)
intoGenTMEM196
Cancer3DTMEM196(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTMEM196
Genetic Testing Registry TMEM196
NextProtQ5HYL7 [Medical]
TSGene256130
GENETestsTMEM196
Target ValidationTMEM196
Huge Navigator TMEM196 [HugePedia]
snp3D : Map Gene to Disease256130
BioCentury BCIQTMEM196
ClinGenTMEM196
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD256130
Chemical/Pharm GKB GenePA162406335
Clinical trialTMEM196
Miscellaneous
canSAR (ICR)TMEM196 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM196
EVEXTMEM196
GoPubMedTMEM196
iHOPTMEM196
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 14:09:56 CEST 2017

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