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TMEM198 (transmembrane protein 198)

Identity

Alias_symbol (synonym)MGC99813
TMEM198A
Other alias
HGNC (Hugo) TMEM198
LocusID (NCBI) 130612
Atlas_Id 74863
Location 2q35  [Link to chromosome band 2q35]
Location_base_pair Starts at 219544006 and ends at 219550596 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM198   33704
Cards
Entrez_Gene (NCBI)TMEM198  130612  transmembrane protein 198
AliasesTMEM198A
GeneCards (Weizmann)TMEM198
Ensembl hg19 (Hinxton)ENSG00000188760 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000188760 [Gene_View]  chr2:219544006-219550596 [Contig_View]  TMEM198 [Vega]
ICGC DataPortalENSG00000188760
TCGA cBioPortalTMEM198
AceView (NCBI)TMEM198
Genatlas (Paris)TMEM198
WikiGenes130612
SOURCE (Princeton)TMEM198
Genetics Home Reference (NIH)TMEM198
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM198  -     chr2:219544006-219550596 +  2q35   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM198  -     2q35   [Description]    (hg19-Feb_2009)
EnsemblTMEM198 - 2q35 [CytoView hg19]  TMEM198 - 2q35 [CytoView hg38]
Mapping of homologs : NCBITMEM198 [Mapview hg19]  TMEM198 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK123175 AK302369 BC068567 BC080573 BI753377
RefSeq transcript (Entrez)NM_001005209 NM_001303098
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMEM198
Cluster EST : UnigeneHs.446664 [ NCBI ]
CGAP (NCI)Hs.446664
Alternative Splicing GalleryENSG00000188760
Gene ExpressionTMEM198 [ NCBI-GEO ]   TMEM198 [ EBI - ARRAY_EXPRESS ]   TMEM198 [ SEEK ]   TMEM198 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM198 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)130612
GTEX Portal (Tissue expression)TMEM198
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ66K66   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ66K66  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ66K66
Splice isoforms : SwissVarQ66K66
PhosPhoSitePlusQ66K66
Domains : Interpro (EBI)DUF4203   
Domain families : Pfam (Sanger)DUF4203 (PF13886)   
Domain families : Pfam (NCBI)pfam13886   
Conserved Domain (NCBI)TMEM198
DMDM Disease mutations130612
Blocks (Seattle)TMEM198
SuperfamilyQ66K66
Human Protein AtlasENSG00000188760
Peptide AtlasQ66K66
HPRD14718
IPIIPI00164776   IPI00853381   IPI00853299   
Protein Interaction databases
DIP (DOE-UCLA)Q66K66
IntAct (EBI)Q66K66
FunCoupENSG00000188760
BioGRIDTMEM198
STRING (EMBL)TMEM198
ZODIACTMEM198
Ontologies - Pathways
QuickGOQ66K66
Ontology : AmiGOplasma membrane  multicellular organism development  integral component of membrane  Wnt signaling pathway  cytoplasmic vesicle  positive regulation of canonical Wnt signaling pathway  
Ontology : EGO-EBIplasma membrane  multicellular organism development  integral component of membrane  Wnt signaling pathway  cytoplasmic vesicle  positive regulation of canonical Wnt signaling pathway  
NDEx NetworkTMEM198
Atlas of Cancer Signalling NetworkTMEM198
Wikipedia pathwaysTMEM198
Orthology - Evolution
OrthoDB130612
GeneTree (enSembl)ENSG00000188760
Phylogenetic Trees/Animal Genes : TreeFamTMEM198
HOVERGENQ66K66
HOGENOMQ66K66
Homologs : HomoloGeneTMEM198
Homology/Alignments : Family Browser (UCSC)TMEM198
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM198 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM198
dbVarTMEM198
ClinVarTMEM198
1000_GenomesTMEM198 
Exome Variant ServerTMEM198
ExAC (Exome Aggregation Consortium)TMEM198 (select the gene name)
Genetic variants : HAPMAP130612
Genomic Variants (DGV)TMEM198 [DGVbeta]
DECIPHERTMEM198 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM198 
Mutations
ICGC Data PortalTMEM198 
TCGA Data PortalTMEM198 
Broad Tumor PortalTMEM198
OASIS PortalTMEM198 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM198  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM198
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM198
DgiDB (Drug Gene Interaction Database)TMEM198
DoCM (Curated mutations)TMEM198 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM198 (select a term)
intoGenTMEM198
Cancer3DTMEM198(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTMEM198
Genetic Testing Registry TMEM198
NextProtQ66K66 [Medical]
TSGene130612
GENETestsTMEM198
Target ValidationTMEM198
Huge Navigator TMEM198 [HugePedia]
snp3D : Map Gene to Disease130612
BioCentury BCIQTMEM198
ClinGenTMEM198
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD130612
Chemical/Pharm GKB GenePA162406347
Clinical trialTMEM198
Miscellaneous
canSAR (ICR)TMEM198 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM198
EVEXTMEM198
GoPubMedTMEM198
iHOPTMEM198
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:41:48 CEST 2017

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