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TMEM199 (transmembrane protein 199)

Identity

Alias_namesC17orf32
chromosome 17 open reading frame 32
Alias_symbol (synonym)MGC45714
VPH2
VMA12
Other aliasCDG2P
HGNC (Hugo) TMEM199
LocusID (NCBI) 147007
Atlas_Id 74865
Location 17q11.2  [Link to chromosome band 17q11]
Location_base_pair Starts at 28357581 and ends at 28363683 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
TMEM199 (17q11.2) / TFIP11 (22q12.1)TMEM199 (17q11.2) / TMEM199 (17q11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM199   18085
Cards
Entrez_Gene (NCBI)TMEM199  147007  transmembrane protein 199
AliasesC17orf32; CDG2P; VMA12; VPH2
GeneCards (Weizmann)TMEM199
Ensembl hg19 (Hinxton)ENSG00000244045 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000244045 [Gene_View]  chr17:28357581-28363683 [Contig_View]  TMEM199 [Vega]
ICGC DataPortalENSG00000244045
TCGA cBioPortalTMEM199
AceView (NCBI)TMEM199
Genatlas (Paris)TMEM199
WikiGenes147007
SOURCE (Princeton)TMEM199
Genetics Home Reference (NIH)TMEM199
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM199  -     chr17:28357581-28363683 +  17q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM199  -     17q11.2   [Description]    (hg19-Feb_2009)
EnsemblTMEM199 - 17q11.2 [CytoView hg19]  TMEM199 - 17q11.2 [CytoView hg38]
Mapping of homologs : NCBITMEM199 [Mapview hg19]  TMEM199 [Mapview hg38]
OMIM616815   616829   
Gene and transcription
Genbank (Entrez)AA279827 AK223584 AK291475 AK311363 AY074907
RefSeq transcript (Entrez)NM_152464
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMEM199
Cluster EST : UnigeneHs.707906 [ NCBI ]
CGAP (NCI)Hs.707906
Alternative Splicing GalleryENSG00000244045
Gene ExpressionTMEM199 [ NCBI-GEO ]   TMEM199 [ EBI - ARRAY_EXPRESS ]   TMEM199 [ SEEK ]   TMEM199 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM199 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)147007
GTEX Portal (Tissue expression)TMEM199
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N511   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N511  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N511
Splice isoforms : SwissVarQ8N511
PhosPhoSitePlusQ8N511
Domains : Interpro (EBI)ATPase_Vma12   
Domain families : Pfam (Sanger)Vma12 (PF11712)   
Domain families : Pfam (NCBI)pfam11712   
Conserved Domain (NCBI)TMEM199
DMDM Disease mutations147007
Blocks (Seattle)TMEM199
SuperfamilyQ8N511
Human Protein AtlasENSG00000244045
Peptide AtlasQ8N511
HPRD12679
IPIIPI00166746   IPI00964208   IPI00796192   
Protein Interaction databases
DIP (DOE-UCLA)Q8N511
IntAct (EBI)Q8N511
FunCoupENSG00000244045
BioGRIDTMEM199
STRING (EMBL)TMEM199
ZODIACTMEM199
Ontologies - Pathways
QuickGOQ8N511
Ontology : AmiGOprotein binding  integral component of membrane  COPI-coated vesicle membrane  endoplasmic reticulum-Golgi intermediate compartment membrane  
Ontology : EGO-EBIprotein binding  integral component of membrane  COPI-coated vesicle membrane  endoplasmic reticulum-Golgi intermediate compartment membrane  
NDEx NetworkTMEM199
Atlas of Cancer Signalling NetworkTMEM199
Wikipedia pathwaysTMEM199
Orthology - Evolution
OrthoDB147007
GeneTree (enSembl)ENSG00000244045
Phylogenetic Trees/Animal Genes : TreeFamTMEM199
HOVERGENQ8N511
HOGENOMQ8N511
Homologs : HomoloGeneTMEM199
Homology/Alignments : Family Browser (UCSC)TMEM199
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM199 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM199
dbVarTMEM199
ClinVarTMEM199
1000_GenomesTMEM199 
Exome Variant ServerTMEM199
ExAC (Exome Aggregation Consortium)TMEM199 (select the gene name)
Genetic variants : HAPMAP147007
Genomic Variants (DGV)TMEM199 [DGVbeta]
DECIPHERTMEM199 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM199 
Mutations
ICGC Data PortalTMEM199 
TCGA Data PortalTMEM199 
Broad Tumor PortalTMEM199
OASIS PortalTMEM199 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM199  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM199
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM199
DgiDB (Drug Gene Interaction Database)TMEM199
DoCM (Curated mutations)TMEM199 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM199 (select a term)
intoGenTMEM199
Cancer3DTMEM199(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616815    616829   
Orphanet
MedgenTMEM199
Genetic Testing Registry TMEM199
NextProtQ8N511 [Medical]
TSGene147007
GENETestsTMEM199
Target ValidationTMEM199
Huge Navigator TMEM199 [HugePedia]
snp3D : Map Gene to Disease147007
BioCentury BCIQTMEM199
ClinGenTMEM199
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD147007
Chemical/Pharm GKB GenePA162406348
Clinical trialTMEM199
Miscellaneous
canSAR (ICR)TMEM199 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM199
EVEXTMEM199
GoPubMedTMEM199
iHOPTMEM199
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:41:49 CEST 2017

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