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TMEM200A (transmembrane protein 200A)

Identity

Alias (NCBI)KIAA1913
TTMA
TTMC
HGNC (Hugo) TMEM200A
HGNC Alias symbTTMC
HGNC Previous nameKIAA1913
HGNC Previous nameKIAA1913
LocusID (NCBI) 114801
Atlas_Id 74867
Location 6q23.1  [Link to chromosome band 6q23]
Location_base_pair Starts at 130437117 and ends at 130443065 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ATG5 (6q21) / TMEM200A (6q23.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TMEM200A   21075
Cards
Entrez_Gene (NCBI)TMEM200A    transmembrane protein 200A
AliasesKIAA1913; TTMA; TTMC
GeneCards (Weizmann)TMEM200A
Ensembl hg19 (Hinxton)ENSG00000164484 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000164484 [Gene_View]  ENSG00000164484 [Sequence]  chr6:130437117-130443065 [Contig_View]  TMEM200A [Vega]
ICGC DataPortalENSG00000164484
TCGA cBioPortalTMEM200A
AceView (NCBI)TMEM200A
Genatlas (Paris)TMEM200A
SOURCE (Princeton)TMEM200A
Genetics Home Reference (NIH)TMEM200A
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM200A  -     chr6:130437117-130443065 +  6q23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM200A  -     6q23.1   [Description]    (hg19-Feb_2009)
GoldenPathTMEM200A - 6q23.1 [CytoView hg19]  TMEM200A - 6q23.1 [CytoView hg38]
ImmunoBaseENSG00000164484
Genome Data Viewer NCBITMEM200A [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AB052099 AB067500 AK290166 AK294359 AK315824
RefSeq transcript (Entrez)NM_001258276 NM_001258277 NM_001258278 NM_052913
Consensus coding sequences : CCDS (NCBI)TMEM200A
Gene ExpressionTMEM200A [ NCBI-GEO ]   TMEM200A [ EBI - ARRAY_EXPRESS ]   TMEM200A [ SEEK ]   TMEM200A [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM200A [ Firebrowse - Broad ]
GenevisibleExpression of TMEM200A in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)114801
GTEX Portal (Tissue expression)TMEM200A
Human Protein AtlasENSG00000164484-TMEM200A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86VY9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86VY9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86VY9
PhosPhoSitePlusQ86VY9
Domains : Interpro (EBI)DUF2371_TMEM200   
Domain families : Pfam (Sanger)DUF2371 (PF10177)   
Domain families : Pfam (NCBI)pfam10177   
Conserved Domain (NCBI)TMEM200A
SuperfamilyQ86VY9
AlphaFold pdb e-kbQ86VY9   
Human Protein Atlas [tissue]ENSG00000164484-TMEM200A [tissue]
HPRD13901
Protein Interaction databases
DIP (DOE-UCLA)Q86VY9
IntAct (EBI)Q86VY9
BioGRIDTMEM200A
STRING (EMBL)TMEM200A
ZODIACTMEM200A
Ontologies - Pathways
QuickGOQ86VY9
Ontology : AmiGOprotein binding  integral component of membrane  
Ontology : EGO-EBIprotein binding  integral component of membrane  
NDEx NetworkTMEM200A
Atlas of Cancer Signalling NetworkTMEM200A
Wikipedia pathwaysTMEM200A
Orthology - Evolution
OrthoDB114801
GeneTree (enSembl)ENSG00000164484
Phylogenetic Trees/Animal Genes : TreeFamTMEM200A
Homologs : HomoloGeneTMEM200A
Homology/Alignments : Family Browser (UCSC)TMEM200A
Gene fusions - Rearrangements
Fusion : QuiverTMEM200A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM200A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM200A
dbVarTMEM200A
ClinVarTMEM200A
MonarchTMEM200A
1000_GenomesTMEM200A 
Exome Variant ServerTMEM200A
GNOMAD BrowserENSG00000164484
Varsome BrowserTMEM200A
ACMGTMEM200A variants
VarityQ86VY9
Genomic Variants (DGV)TMEM200A [DGVbeta]
DECIPHERTMEM200A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM200A 
Mutations
ICGC Data PortalTMEM200A 
TCGA Data PortalTMEM200A 
Broad Tumor PortalTMEM200A
OASIS PortalTMEM200A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM200A  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTMEM200A
Mutations and Diseases : HGMDTMEM200A
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTMEM200A
DgiDB (Drug Gene Interaction Database)TMEM200A
DoCM (Curated mutations)TMEM200A
CIViC (Clinical Interpretations of Variants in Cancer)TMEM200A
Cancer3DTMEM200A
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTMEM200A
MedgenTMEM200A
Genetic Testing Registry TMEM200A
NextProtQ86VY9 [Medical]
GENETestsTMEM200A
Target ValidationTMEM200A
Huge Navigator TMEM200A [HugePedia]
ClinGenTMEM200A
Clinical trials, drugs, therapy
MyCancerGenomeTMEM200A
Protein Interactions : CTDTMEM200A
Pharm GKB GenePA162406349
PharosQ86VY9
Clinical trialTMEM200A
Miscellaneous
canSAR (ICR)TMEM200A
HarmonizomeTMEM200A
DataMed IndexTMEM200A
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTMEM200A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 16:25:58 CEST 2021

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