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TMEM200A (transmembrane protein 200A)

Identity

Alias_namesKIAA1913
KIAA1913
Alias_symbol (synonym)TTMC
Other aliasTTMA
HGNC (Hugo) TMEM200A
LocusID (NCBI) 114801
Atlas_Id 74867
Location 6q23.1  [Link to chromosome band 6q23]
Location_base_pair Starts at 130366281 and ends at 130443065 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ATG5 (6q21) / TMEM200A (6q23.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(6;6)(q21;q23) ATG5/TMEM200A


External links

Nomenclature
HGNC (Hugo)TMEM200A   21075
Cards
Entrez_Gene (NCBI)TMEM200A  114801  transmembrane protein 200A
AliasesKIAA1913; TTMA; TTMC
GeneCards (Weizmann)TMEM200A
Ensembl hg19 (Hinxton)ENSG00000164484 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000164484 [Gene_View]  ENSG00000164484 [Sequence]  chr6:130366281-130443065 [Contig_View]  TMEM200A [Vega]
ICGC DataPortalENSG00000164484
TCGA cBioPortalTMEM200A
AceView (NCBI)TMEM200A
Genatlas (Paris)TMEM200A
WikiGenes114801
SOURCE (Princeton)TMEM200A
Genetics Home Reference (NIH)TMEM200A
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM200A  -     chr6:130366281-130443065 +  6q23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM200A  -     6q23.1   [Description]    (hg19-Feb_2009)
EnsemblTMEM200A - 6q23.1 [CytoView hg19]  TMEM200A - 6q23.1 [CytoView hg38]
Mapping of homologs : NCBITMEM200A [Mapview hg19]  TMEM200A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB052099 AB067500 AK290166 AK294359 AK315824
RefSeq transcript (Entrez)NM_001258276 NM_001258277 NM_001258278 NM_052913
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMEM200A
Cluster EST : UnigeneHs.591341 [ NCBI ]
CGAP (NCI)Hs.591341
Alternative Splicing GalleryENSG00000164484
Gene ExpressionTMEM200A [ NCBI-GEO ]   TMEM200A [ EBI - ARRAY_EXPRESS ]   TMEM200A [ SEEK ]   TMEM200A [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM200A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)114801
GTEX Portal (Tissue expression)TMEM200A
Human Protein AtlasENSG00000164484-TMEM200A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86VY9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86VY9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86VY9
Splice isoforms : SwissVarQ86VY9
PhosPhoSitePlusQ86VY9
Domains : Interpro (EBI)DUF2371_TMEM200   
Domain families : Pfam (Sanger)DUF2371 (PF10177)   
Domain families : Pfam (NCBI)pfam10177   
Conserved Domain (NCBI)TMEM200A
DMDM Disease mutations114801
Blocks (Seattle)TMEM200A
SuperfamilyQ86VY9
Human Protein Atlas [tissue]ENSG00000164484-TMEM200A [tissue]
Peptide AtlasQ86VY9
HPRD13901
IPIIPI00646541   
Protein Interaction databases
DIP (DOE-UCLA)Q86VY9
IntAct (EBI)Q86VY9
FunCoupENSG00000164484
BioGRIDTMEM200A
STRING (EMBL)TMEM200A
ZODIACTMEM200A
Ontologies - Pathways
QuickGOQ86VY9
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkTMEM200A
Atlas of Cancer Signalling NetworkTMEM200A
Wikipedia pathwaysTMEM200A
Orthology - Evolution
OrthoDB114801
GeneTree (enSembl)ENSG00000164484
Phylogenetic Trees/Animal Genes : TreeFamTMEM200A
HOVERGENQ86VY9
HOGENOMQ86VY9
Homologs : HomoloGeneTMEM200A
Homology/Alignments : Family Browser (UCSC)TMEM200A
Gene fusions - Rearrangements
Fusion : QuiverTMEM200A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM200A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM200A
dbVarTMEM200A
ClinVarTMEM200A
1000_GenomesTMEM200A 
Exome Variant ServerTMEM200A
ExAC (Exome Aggregation Consortium)ENSG00000164484
GNOMAD BrowserENSG00000164484
Varsome BrowserTMEM200A
Genetic variants : HAPMAP114801
Genomic Variants (DGV)TMEM200A [DGVbeta]
DECIPHERTMEM200A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM200A 
Mutations
ICGC Data PortalTMEM200A 
TCGA Data PortalTMEM200A 
Broad Tumor PortalTMEM200A
OASIS PortalTMEM200A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM200A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM200A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM200A
DgiDB (Drug Gene Interaction Database)TMEM200A
DoCM (Curated mutations)TMEM200A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM200A (select a term)
intoGenTMEM200A
Cancer3DTMEM200A(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTMEM200A
MedgenTMEM200A
Genetic Testing Registry TMEM200A
NextProtQ86VY9 [Medical]
TSGene114801
GENETestsTMEM200A
Target ValidationTMEM200A
Huge Navigator TMEM200A [HugePedia]
snp3D : Map Gene to Disease114801
BioCentury BCIQTMEM200A
ClinGenTMEM200A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD114801
Chemical/Pharm GKB GenePA162406349
Clinical trialTMEM200A
Miscellaneous
canSAR (ICR)TMEM200A (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM200A
EVEXTMEM200A
GoPubMedTMEM200A
iHOPTMEM200A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Jul 30 14:35:28 CEST 2018

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