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TMEM200B (transmembrane protein 200B)

Identity

Alias (NCBI)TTMB
HGNC (Hugo) TMEM200B
HGNC Alias symbTTMB
LocusID (NCBI) 399474
Atlas_Id 74868
Location 1p35.3  [Link to chromosome band 1p35]
Location_base_pair Starts at 29119425 and ends at 29122501 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TMEM200B   33785
Cards
Entrez_Gene (NCBI)TMEM200B    transmembrane protein 200B
AliasesTTMB
GeneCards (Weizmann)TMEM200B
Ensembl hg19 (Hinxton)ENSG00000253304 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000253304 [Gene_View]  ENSG00000253304 [Sequence]  chr1:29119425-29122501 [Contig_View]  TMEM200B [Vega]
ICGC DataPortalENSG00000253304
TCGA cBioPortalTMEM200B
AceView (NCBI)TMEM200B
Genatlas (Paris)TMEM200B
SOURCE (Princeton)TMEM200B
Genetics Home Reference (NIH)TMEM200B
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM200B  -     chr1:29119425-29122501 -  1p35.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM200B  -     1p35.3   [Description]    (hg19-Feb_2009)
GoldenPathTMEM200B - 1p35.3 [CytoView hg19]  TMEM200B - 1p35.3 [CytoView hg38]
ImmunoBaseENSG00000253304
Genome Data Viewer NCBITMEM200B [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AI367819 AL110282 BC033289 BC064375 BC064538
RefSeq transcript (Entrez)NM_001003682 NM_001171868
Consensus coding sequences : CCDS (NCBI)TMEM200B
Gene ExpressionTMEM200B [ NCBI-GEO ]   TMEM200B [ EBI - ARRAY_EXPRESS ]   TMEM200B [ SEEK ]   TMEM200B [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM200B [ Firebrowse - Broad ]
GenevisibleExpression of TMEM200B in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)399474
GTEX Portal (Tissue expression)TMEM200B
Human Protein AtlasENSG00000253304-TMEM200B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ69YZ2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ69YZ2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ69YZ2
PhosPhoSitePlusQ69YZ2
Domains : Interpro (EBI)DUF2371_TMEM200   
Domain families : Pfam (Sanger)DUF2371 (PF10177)   
Domain families : Pfam (NCBI)pfam10177   
Conserved Domain (NCBI)TMEM200B
SuperfamilyQ69YZ2
AlphaFold pdb e-kbQ69YZ2   
Human Protein Atlas [tissue]ENSG00000253304-TMEM200B [tissue]
HPRD13188
Protein Interaction databases
DIP (DOE-UCLA)Q69YZ2
IntAct (EBI)Q69YZ2
BioGRIDTMEM200B
STRING (EMBL)TMEM200B
ZODIACTMEM200B
Ontologies - Pathways
QuickGOQ69YZ2
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkTMEM200B
Atlas of Cancer Signalling NetworkTMEM200B
Wikipedia pathwaysTMEM200B
Orthology - Evolution
OrthoDB399474
GeneTree (enSembl)ENSG00000253304
Phylogenetic Trees/Animal Genes : TreeFamTMEM200B
Homologs : HomoloGeneTMEM200B
Homology/Alignments : Family Browser (UCSC)TMEM200B
Gene fusions - Rearrangements
Fusion : QuiverTMEM200B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM200B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM200B
dbVarTMEM200B
ClinVarTMEM200B
MonarchTMEM200B
1000_GenomesTMEM200B 
Exome Variant ServerTMEM200B
GNOMAD BrowserENSG00000253304
Varsome BrowserTMEM200B
ACMGTMEM200B variants
VarityQ69YZ2
Genomic Variants (DGV)TMEM200B [DGVbeta]
DECIPHERTMEM200B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM200B 
Mutations
ICGC Data PortalTMEM200B 
TCGA Data PortalTMEM200B 
Broad Tumor PortalTMEM200B
OASIS PortalTMEM200B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM200B  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTMEM200B
Mutations and Diseases : HGMDTMEM200B
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTMEM200B
DgiDB (Drug Gene Interaction Database)TMEM200B
DoCM (Curated mutations)TMEM200B
CIViC (Clinical Interpretations of Variants in Cancer)TMEM200B
Cancer3DTMEM200B
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTMEM200B
MedgenTMEM200B
Genetic Testing Registry TMEM200B
NextProtQ69YZ2 [Medical]
GENETestsTMEM200B
Target ValidationTMEM200B
Huge Navigator TMEM200B [HugePedia]
ClinGenTMEM200B
Clinical trials, drugs, therapy
MyCancerGenomeTMEM200B
Protein Interactions : CTDTMEM200B
Pharm GKB GenePA162406350
PharosQ69YZ2
Clinical trialTMEM200B
Miscellaneous
canSAR (ICR)TMEM200B
HarmonizomeTMEM200B
DataMed IndexTMEM200B
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTMEM200B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 16:25:58 CEST 2021

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