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TMEM200B (transmembrane protein 200B)

Identity

Alias_symbol (synonym)TTMB
Other alias
HGNC (Hugo) TMEM200B
LocusID (NCBI) 399474
Atlas_Id 74868
Location 1p35.3  [Link to chromosome band 1p35]
Location_base_pair Starts at 29445937 and ends at 29450421 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM200B   33785
Cards
Entrez_Gene (NCBI)TMEM200B  399474  transmembrane protein 200B
AliasesTTMB
GeneCards (Weizmann)TMEM200B
Ensembl hg19 (Hinxton)ENSG00000253304 [Gene_View]  chr1:29445937-29450421 [Contig_View]  TMEM200B [Vega]
Ensembl hg38 (Hinxton)ENSG00000253304 [Gene_View]  chr1:29445937-29450421 [Contig_View]  TMEM200B [Vega]
ICGC DataPortalENSG00000253304
TCGA cBioPortalTMEM200B
AceView (NCBI)TMEM200B
Genatlas (Paris)TMEM200B
WikiGenes399474
SOURCE (Princeton)TMEM200B
Genetics Home Reference (NIH)TMEM200B
Genomic and cartography
GoldenPath hg19 (UCSC)TMEM200B  -     chr1:29445937-29450421 -  1p35.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TMEM200B  -     1p35.3   [Description]    (hg38-Dec_2013)
EnsemblTMEM200B - 1p35.3 [CytoView hg19]  TMEM200B - 1p35.3 [CytoView hg38]
Mapping of homologs : NCBITMEM200B [Mapview hg19]  TMEM200B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI367819 AL110282 BC033289 BC064375 BC064538
RefSeq transcript (Entrez)NM_001003682 NM_001171868
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_032977 NW_004929289
Consensus coding sequences : CCDS (NCBI)TMEM200B
Cluster EST : UnigeneHs.712722 [ NCBI ]
CGAP (NCI)Hs.712722
Alternative Splicing GalleryENSG00000253304
Gene ExpressionTMEM200B [ NCBI-GEO ]   TMEM200B [ EBI - ARRAY_EXPRESS ]   TMEM200B [ SEEK ]   TMEM200B [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM200B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)399474
GTEX Portal (Tissue expression)TMEM200B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ69YZ2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ69YZ2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ69YZ2
Splice isoforms : SwissVarQ69YZ2
PhosPhoSitePlusQ69YZ2
Domains : Interpro (EBI)DUF2371_TMEM200   
Domain families : Pfam (Sanger)DUF2371 (PF10177)   
Domain families : Pfam (NCBI)pfam10177   
Conserved Domain (NCBI)TMEM200B
DMDM Disease mutations399474
Blocks (Seattle)TMEM200B
SuperfamilyQ69YZ2
Human Protein AtlasENSG00000253304
Peptide AtlasQ69YZ2
HPRD13188
IPIIPI00465423   
Protein Interaction databases
DIP (DOE-UCLA)Q69YZ2
IntAct (EBI)Q69YZ2
FunCoupENSG00000253304
BioGRIDTMEM200B
STRING (EMBL)TMEM200B
ZODIACTMEM200B
Ontologies - Pathways
QuickGOQ69YZ2
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkTMEM200B
Atlas of Cancer Signalling NetworkTMEM200B
Wikipedia pathwaysTMEM200B
Orthology - Evolution
OrthoDB399474
GeneTree (enSembl)ENSG00000253304
Phylogenetic Trees/Animal Genes : TreeFamTMEM200B
HOVERGENQ69YZ2
HOGENOMQ69YZ2
Homologs : HomoloGeneTMEM200B
Homology/Alignments : Family Browser (UCSC)TMEM200B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM200B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM200B
dbVarTMEM200B
ClinVarTMEM200B
1000_GenomesTMEM200B 
Exome Variant ServerTMEM200B
ExAC (Exome Aggregation Consortium)TMEM200B (select the gene name)
Genetic variants : HAPMAP399474
Genomic Variants (DGV)TMEM200B [DGVbeta]
DECIPHER (Syndromes)1:29445937-29450421  ENSG00000253304
CONAN: Copy Number AnalysisTMEM200B 
Mutations
ICGC Data PortalTMEM200B 
TCGA Data PortalTMEM200B 
Broad Tumor PortalTMEM200B
OASIS PortalTMEM200B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM200B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM200B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM200B
DgiDB (Drug Gene Interaction Database)TMEM200B
DoCM (Curated mutations)TMEM200B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM200B (select a term)
intoGenTMEM200B
Cancer3DTMEM200B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTMEM200B
Genetic Testing Registry TMEM200B
NextProtQ69YZ2 [Medical]
TSGene399474
GENETestsTMEM200B
Huge Navigator TMEM200B [HugePedia]
snp3D : Map Gene to Disease399474
BioCentury BCIQTMEM200B
ClinGenTMEM200B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD399474
Chemical/Pharm GKB GenePA162406350
Clinical trialTMEM200B
Miscellaneous
canSAR (ICR)TMEM200B (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM200B
EVEXTMEM200B
GoPubMedTMEM200B
iHOPTMEM200B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Mar 14 12:48:40 CET 2017

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