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TMEM201 (transmembrane protein 201)

Identity

Alias_symbol (synonym)RP13-15M17.2
NET5
Ima1
SAMP1
Other alias
HGNC (Hugo) TMEM201
LocusID (NCBI) 199953
Atlas_Id 74870
Location 1p36.22  [Link to chromosome band 1p36]
Location_base_pair Starts at 9648932 and ends at 9665020 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
TMEM201 (1p36.22) / RPPH1 (14q11.2)TMEM201 (1p36.22) / SPSB1 (1p36.22)WDR13 (Xp11.23) / TMEM201 (1p36.22)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM201   33719
Cards
Entrez_Gene (NCBI)TMEM201  199953  transmembrane protein 201
AliasesNET5
GeneCards (Weizmann)TMEM201
Ensembl hg19 (Hinxton)ENSG00000188807 [Gene_View]  chr1:9648932-9665020 [Contig_View]  TMEM201 [Vega]
Ensembl hg38 (Hinxton)ENSG00000188807 [Gene_View]  chr1:9648932-9665020 [Contig_View]  TMEM201 [Vega]
ICGC DataPortalENSG00000188807
TCGA cBioPortalTMEM201
AceView (NCBI)TMEM201
Genatlas (Paris)TMEM201
WikiGenes199953
SOURCE (Princeton)TMEM201
Genetics Home Reference (NIH)TMEM201
Genomic and cartography
GoldenPath hg19 (UCSC)TMEM201  -     chr1:9648932-9665020 +  1p36.22   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TMEM201  -     1p36.22   [Description]    (hg38-Dec_2013)
EnsemblTMEM201 - 1p36.22 [CytoView hg19]  TMEM201 - 1p36.22 [CytoView hg38]
Mapping of homologs : NCBITMEM201 [Mapview hg19]  TMEM201 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI685174 BC121187 BC137291 BE676679 BG828926
RefSeq transcript (Entrez)NM_001010866 NM_001130924
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_032977 NW_004929289
Consensus coding sequences : CCDS (NCBI)TMEM201
Cluster EST : UnigeneHs.706017 [ NCBI ]
CGAP (NCI)Hs.706017
Alternative Splicing GalleryENSG00000188807
Gene ExpressionTMEM201 [ NCBI-GEO ]   TMEM201 [ EBI - ARRAY_EXPRESS ]   TMEM201 [ SEEK ]   TMEM201 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM201 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)199953
GTEX Portal (Tissue expression)TMEM201
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5SNT2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5SNT2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5SNT2
Splice isoforms : SwissVarQ5SNT2
PhosPhoSitePlusQ5SNT2
Domains : Interpro (EBI)DUF2448    Ima1_N   
Domain families : Pfam (Sanger)DUF2448 (PF10476)    Ima1_N (PF09779)   
Domain families : Pfam (NCBI)pfam10476    pfam09779   
Conserved Domain (NCBI)TMEM201
DMDM Disease mutations199953
Blocks (Seattle)TMEM201
SuperfamilyQ5SNT2
Human Protein AtlasENSG00000188807
Peptide AtlasQ5SNT2
HPRD17991
IPIIPI00644438   IPI00159358   IPI00550547   IPI00921271   IPI00964384   
Protein Interaction databases
DIP (DOE-UCLA)Q5SNT2
IntAct (EBI)Q5SNT2
FunCoupENSG00000188807
BioGRIDTMEM201
STRING (EMBL)TMEM201
ZODIACTMEM201
Ontologies - Pathways
QuickGOQ5SNT2
Ontology : AmiGOlamin binding  nuclear inner membrane  nuclear migration  fibroblast migration  integral component of membrane  actin filament binding  
Ontology : EGO-EBIlamin binding  nuclear inner membrane  nuclear migration  fibroblast migration  integral component of membrane  actin filament binding  
NDEx NetworkTMEM201
Atlas of Cancer Signalling NetworkTMEM201
Wikipedia pathwaysTMEM201
Orthology - Evolution
OrthoDB199953
GeneTree (enSembl)ENSG00000188807
Phylogenetic Trees/Animal Genes : TreeFamTMEM201
HOVERGENQ5SNT2
HOGENOMQ5SNT2
Homologs : HomoloGeneTMEM201
Homology/Alignments : Family Browser (UCSC)TMEM201
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM201 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM201
dbVarTMEM201
ClinVarTMEM201
1000_GenomesTMEM201 
Exome Variant ServerTMEM201
ExAC (Exome Aggregation Consortium)TMEM201 (select the gene name)
Genetic variants : HAPMAP199953
Genomic Variants (DGV)TMEM201 [DGVbeta]
DECIPHER (Syndromes)1:9648932-9665020  ENSG00000188807
CONAN: Copy Number AnalysisTMEM201 
Mutations
ICGC Data PortalTMEM201 
TCGA Data PortalTMEM201 
Broad Tumor PortalTMEM201
OASIS PortalTMEM201 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM201  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM201
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM201
DgiDB (Drug Gene Interaction Database)TMEM201
DoCM (Curated mutations)TMEM201 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM201 (select a term)
intoGenTMEM201
Cancer3DTMEM201(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTMEM201
Genetic Testing Registry TMEM201
NextProtQ5SNT2 [Medical]
TSGene199953
GENETestsTMEM201
Huge Navigator TMEM201 [HugePedia]
snp3D : Map Gene to Disease199953
BioCentury BCIQTMEM201
ClinGenTMEM201
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD199953
Chemical/Pharm GKB GenePA162406359
Clinical trialTMEM201
Miscellaneous
canSAR (ICR)TMEM201 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM201
EVEXTMEM201
GoPubMedTMEM201
iHOPTMEM201
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:48:40 CET 2017

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