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TMEM202 (transmembrane protein 202)

Identity

Alias_symbol (synonym)FLJ27523
Other alias-
HGNC (Hugo) TMEM202
LocusID (NCBI) 338949
Atlas_Id 74871
Location 15q23  [Link to chromosome band 15q23]
Location_base_pair Starts at 72398327 and ends at 72408367 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM202   33733
Cards
Entrez_Gene (NCBI)TMEM202  338949  transmembrane protein 202
Aliases
GeneCards (Weizmann)TMEM202
Ensembl hg19 (Hinxton)ENSG00000187806 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000187806 [Gene_View]  chr15:72398327-72408367 [Contig_View]  TMEM202 [Vega]
ICGC DataPortalENSG00000187806
TCGA cBioPortalTMEM202
AceView (NCBI)TMEM202
Genatlas (Paris)TMEM202
WikiGenes338949
SOURCE (Princeton)TMEM202
Genetics Home Reference (NIH)TMEM202
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM202  -     chr15:72398327-72408367 +  15q23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM202  -     15q23   [Description]    (hg19-Feb_2009)
EnsemblTMEM202 - 15q23 [CytoView hg19]  TMEM202 - 15q23 [CytoView hg38]
Mapping of homologs : NCBITMEM202 [Mapview hg19]  TMEM202 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK131033
RefSeq transcript (Entrez)NM_001080462
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMEM202
Cluster EST : UnigeneHs.446069 [ NCBI ]
CGAP (NCI)Hs.446069
Alternative Splicing GalleryENSG00000187806
Gene ExpressionTMEM202 [ NCBI-GEO ]   TMEM202 [ EBI - ARRAY_EXPRESS ]   TMEM202 [ SEEK ]   TMEM202 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM202 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)338949
GTEX Portal (Tissue expression)TMEM202
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NGA9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NGA9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NGA9
Splice isoforms : SwissVarA6NGA9
PhosPhoSitePlusA6NGA9
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TMEM202
DMDM Disease mutations338949
Blocks (Seattle)TMEM202
SuperfamilyA6NGA9
Human Protein AtlasENSG00000187806
Peptide AtlasA6NGA9
IPIIPI00250368   
Protein Interaction databases
DIP (DOE-UCLA)A6NGA9
IntAct (EBI)A6NGA9
FunCoupENSG00000187806
BioGRIDTMEM202
STRING (EMBL)TMEM202
ZODIACTMEM202
Ontologies - Pathways
QuickGOA6NGA9
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkTMEM202
Atlas of Cancer Signalling NetworkTMEM202
Wikipedia pathwaysTMEM202
Orthology - Evolution
OrthoDB338949
GeneTree (enSembl)ENSG00000187806
Phylogenetic Trees/Animal Genes : TreeFamTMEM202
HOVERGENA6NGA9
HOGENOMA6NGA9
Homologs : HomoloGeneTMEM202
Homology/Alignments : Family Browser (UCSC)TMEM202
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM202 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM202
dbVarTMEM202
ClinVarTMEM202
1000_GenomesTMEM202 
Exome Variant ServerTMEM202
ExAC (Exome Aggregation Consortium)TMEM202 (select the gene name)
Genetic variants : HAPMAP338949
Genomic Variants (DGV)TMEM202 [DGVbeta]
DECIPHERTMEM202 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM202 
Mutations
ICGC Data PortalTMEM202 
TCGA Data PortalTMEM202 
Broad Tumor PortalTMEM202
OASIS PortalTMEM202 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM202  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM202
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM202
DgiDB (Drug Gene Interaction Database)TMEM202
DoCM (Curated mutations)TMEM202 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM202 (select a term)
intoGenTMEM202
Cancer3DTMEM202(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTMEM202
Genetic Testing Registry TMEM202
NextProtA6NGA9 [Medical]
TSGene338949
GENETestsTMEM202
Huge Navigator TMEM202 [HugePedia]
snp3D : Map Gene to Disease338949
BioCentury BCIQTMEM202
ClinGenTMEM202
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD338949
Chemical/Pharm GKB GenePA162406376
Clinical trialTMEM202
Miscellaneous
canSAR (ICR)TMEM202 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM202
EVEXTMEM202
GoPubMedTMEM202
iHOPTMEM202
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 11:58:36 CEST 2017

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