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TMEM203 (transmembrane protein 203)

Identity

Alias_symbol (synonym)MGC14327
HBEBP1
Other alias
HGNC (Hugo) TMEM203
LocusID (NCBI) 94107
Atlas_Id 53056
Location 9q34.3  [Link to chromosome band 9q34]
Location_base_pair Starts at 140098535 and ends at 140100090 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
PKMYT1 (16p13.3) / TMEM203 (9q34.3)TMEM203 (9q34.3) / TPRN (9q34.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM203   28217
Cards
Entrez_Gene (NCBI)TMEM203  94107  transmembrane protein 203
AliasesHBEBP1
GeneCards (Weizmann)TMEM203
Ensembl hg19 (Hinxton)ENSG00000187713 [Gene_View]  chr9:140098535-140100090 [Contig_View]  TMEM203 [Vega]
Ensembl hg38 (Hinxton)ENSG00000187713 [Gene_View]  chr9:140098535-140100090 [Contig_View]  TMEM203 [Vega]
ICGC DataPortalENSG00000187713
TCGA cBioPortalTMEM203
AceView (NCBI)TMEM203
Genatlas (Paris)TMEM203
WikiGenes94107
SOURCE (Princeton)TMEM203
Genetics Home Reference (NIH)TMEM203
Genomic and cartography
GoldenPath hg19 (UCSC)TMEM203  -     chr9:140098535-140100090 -  9q34.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TMEM203  -     9q34.3   [Description]    (hg38-Dec_2013)
EnsemblTMEM203 - 9q34.3 [CytoView hg19]  TMEM203 - 9q34.3 [CytoView hg38]
Mapping of homologs : NCBITMEM203 [Mapview hg19]  TMEM203 [Mapview hg38]
OMIM616499   
Gene and transcription
Genbank (Entrez)AF529372 AX775751 BC009283 BC009461 BC067786
RefSeq transcript (Entrez)NM_053045
RefSeq genomic (Entrez)NC_000009 NC_018920 NG_027801 NT_008470 NW_004929369
Consensus coding sequences : CCDS (NCBI)TMEM203
Cluster EST : UnigeneHs.231029 [ NCBI ]
CGAP (NCI)Hs.231029
Alternative Splicing GalleryENSG00000187713
Gene ExpressionTMEM203 [ NCBI-GEO ]   TMEM203 [ EBI - ARRAY_EXPRESS ]   TMEM203 [ SEEK ]   TMEM203 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM203 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)94107
GTEX Portal (Tissue expression)TMEM203
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ969S6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ969S6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ969S6
Splice isoforms : SwissVarQ969S6
PhosPhoSitePlusQ969S6
Domains : Interpro (EBI)TM_Fragile-X-F-assoc   
Domain families : Pfam (Sanger)Tmemb_185A (PF10269)   
Domain families : Pfam (NCBI)pfam10269   
Conserved Domain (NCBI)TMEM203
DMDM Disease mutations94107
Blocks (Seattle)TMEM203
SuperfamilyQ969S6
Human Protein AtlasENSG00000187713
Peptide AtlasQ969S6
HPRD17496
IPIIPI00056500   IPI00385107   
Protein Interaction databases
DIP (DOE-UCLA)Q969S6
IntAct (EBI)Q969S6
FunCoupENSG00000187713
BioGRIDTMEM203
STRING (EMBL)TMEM203
ZODIACTMEM203
Ontologies - Pathways
QuickGOQ969S6
Ontology : AmiGOpositive regulation of defense response to virus by host  protein binding  endoplasmic reticulum  endoplasmic reticulum membrane  cellular calcium ion homeostasis  spermatogenesis  integral component of membrane  mitophagy in response to mitochondrial depolarization  xenophagy  
Ontology : EGO-EBIpositive regulation of defense response to virus by host  protein binding  endoplasmic reticulum  endoplasmic reticulum membrane  cellular calcium ion homeostasis  spermatogenesis  integral component of membrane  mitophagy in response to mitochondrial depolarization  xenophagy  
NDEx NetworkTMEM203
Atlas of Cancer Signalling NetworkTMEM203
Wikipedia pathwaysTMEM203
Orthology - Evolution
OrthoDB94107
GeneTree (enSembl)ENSG00000187713
Phylogenetic Trees/Animal Genes : TreeFamTMEM203
HOVERGENQ969S6
HOGENOMQ969S6
Homologs : HomoloGeneTMEM203
Homology/Alignments : Family Browser (UCSC)TMEM203
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM203 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM203
dbVarTMEM203
ClinVarTMEM203
1000_GenomesTMEM203 
Exome Variant ServerTMEM203
ExAC (Exome Aggregation Consortium)TMEM203 (select the gene name)
Genetic variants : HAPMAP94107
Genomic Variants (DGV)TMEM203 [DGVbeta]
DECIPHER (Syndromes)9:140098535-140100090  ENSG00000187713
CONAN: Copy Number AnalysisTMEM203 
Mutations
ICGC Data PortalTMEM203 
TCGA Data PortalTMEM203 
Broad Tumor PortalTMEM203
OASIS PortalTMEM203 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM203  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM203
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM203
DgiDB (Drug Gene Interaction Database)TMEM203
DoCM (Curated mutations)TMEM203 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM203 (select a term)
intoGenTMEM203
Cancer3DTMEM203(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616499   
Orphanet
MedgenTMEM203
Genetic Testing Registry TMEM203
NextProtQ969S6 [Medical]
TSGene94107
GENETestsTMEM203
Huge Navigator TMEM203 [HugePedia]
snp3D : Map Gene to Disease94107
BioCentury BCIQTMEM203
ClinGenTMEM203
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD94107
Chemical/Pharm GKB GenePA162406377
Clinical trialTMEM203
Miscellaneous
canSAR (ICR)TMEM203 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM203
EVEXTMEM203
GoPubMedTMEM203
iHOPTMEM203
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:22:44 CEST 2017

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