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TMEM204 (transmembrane protein 204)

Identity

Alias_namesC16orf30
chromosome 16 open reading frame 30
Alias_symbol (synonym)FLJ20898
CLP24
Other alias
HGNC (Hugo) TMEM204
LocusID (NCBI) 79652
Atlas_Id 74872
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 1528741 and ends at 1555580 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
TSC2 (16p13.3) / TMEM204 (16p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM204   14158
Cards
Entrez_Gene (NCBI)TMEM204  79652  transmembrane protein 204
AliasesC16orf30; CLP24
GeneCards (Weizmann)TMEM204
Ensembl hg19 (Hinxton)ENSG00000131634 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000131634 [Gene_View]  chr16:1528741-1555580 [Contig_View]  TMEM204 [Vega]
ICGC DataPortalENSG00000131634
TCGA cBioPortalTMEM204
AceView (NCBI)TMEM204
Genatlas (Paris)TMEM204
WikiGenes79652
SOURCE (Princeton)TMEM204
Genetics Home Reference (NIH)TMEM204
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM204  -     chr16:1528741-1555580 +  16p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM204  -     16p13.3   [Description]    (hg19-Feb_2009)
EnsemblTMEM204 - 16p13.3 [CytoView hg19]  TMEM204 - 16p13.3 [CytoView hg38]
Mapping of homologs : NCBITMEM204 [Mapview hg19]  TMEM204 [Mapview hg38]
OMIM611002   
Gene and transcription
Genbank (Entrez)AK024551 AY358178 AY676494 BC004932 BC020425
RefSeq transcript (Entrez)NM_001256541 NM_024600
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMEM204
Cluster EST : UnigeneHs.459652 [ NCBI ]
CGAP (NCI)Hs.459652
Alternative Splicing GalleryENSG00000131634
Gene ExpressionTMEM204 [ NCBI-GEO ]   TMEM204 [ EBI - ARRAY_EXPRESS ]   TMEM204 [ SEEK ]   TMEM204 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM204 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79652
GTEX Portal (Tissue expression)TMEM204
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BSN7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BSN7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BSN7
Splice isoforms : SwissVarQ9BSN7
PhosPhoSitePlusQ9BSN7
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TMEM204
DMDM Disease mutations79652
Blocks (Seattle)TMEM204
SuperfamilyQ9BSN7
Human Protein AtlasENSG00000131634
Peptide AtlasQ9BSN7
IPIIPI00305452   IPI00982695   
Protein Interaction databases
DIP (DOE-UCLA)Q9BSN7
IntAct (EBI)Q9BSN7
FunCoupENSG00000131634
BioGRIDTMEM204
STRING (EMBL)TMEM204
ZODIACTMEM204
Ontologies - Pathways
QuickGOQ9BSN7
Ontology : AmiGOlymph vessel development  plasma membrane  adherens junction  integral component of membrane  regulation of vascular endothelial growth factor receptor signaling pathway  smooth muscle cell differentiation  
Ontology : EGO-EBIlymph vessel development  plasma membrane  adherens junction  integral component of membrane  regulation of vascular endothelial growth factor receptor signaling pathway  smooth muscle cell differentiation  
NDEx NetworkTMEM204
Atlas of Cancer Signalling NetworkTMEM204
Wikipedia pathwaysTMEM204
Orthology - Evolution
OrthoDB79652
GeneTree (enSembl)ENSG00000131634
Phylogenetic Trees/Animal Genes : TreeFamTMEM204
HOVERGENQ9BSN7
HOGENOMQ9BSN7
Homologs : HomoloGeneTMEM204
Homology/Alignments : Family Browser (UCSC)TMEM204
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM204 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM204
dbVarTMEM204
ClinVarTMEM204
1000_GenomesTMEM204 
Exome Variant ServerTMEM204
ExAC (Exome Aggregation Consortium)TMEM204 (select the gene name)
Genetic variants : HAPMAP79652
Genomic Variants (DGV)TMEM204 [DGVbeta]
DECIPHERTMEM204 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM204 
Mutations
ICGC Data PortalTMEM204 
TCGA Data PortalTMEM204 
Broad Tumor PortalTMEM204
OASIS PortalTMEM204 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM204  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM204
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM204
DgiDB (Drug Gene Interaction Database)TMEM204
DoCM (Curated mutations)TMEM204 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM204 (select a term)
intoGenTMEM204
Cancer3DTMEM204(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611002   
Orphanet
MedgenTMEM204
Genetic Testing Registry TMEM204
NextProtQ9BSN7 [Medical]
TSGene79652
GENETestsTMEM204
Target ValidationTMEM204
Huge Navigator TMEM204 [HugePedia]
snp3D : Map Gene to Disease79652
BioCentury BCIQTMEM204
ClinGenTMEM204
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79652
Chemical/Pharm GKB GenePA162406384
Clinical trialTMEM204
Miscellaneous
canSAR (ICR)TMEM204 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM204
EVEXTMEM204
GoPubMedTMEM204
iHOPTMEM204
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:46:06 CEST 2017

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