Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TMEM204 (transmembrane protein 204)

Identity

Alias (NCBI)C16orf30
CLP24
HGNC (Hugo) TMEM204
HGNC Alias symbFLJ20898
CLP24
HGNC Alias nameclaudin-like protein of 24 kDa
HGNC Previous nameC16orf30
HGNC Previous namechromosome 16 open reading frame 30
LocusID (NCBI) 79652
Atlas_Id 74872
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 1533666 and ends at 1555568 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TSC2 (16p13.3) / TMEM204 (16p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TMEM204   14158
Cards
Entrez_Gene (NCBI)TMEM204    transmembrane protein 204
AliasesC16orf30; CLP24
GeneCards (Weizmann)TMEM204
Ensembl hg19 (Hinxton)ENSG00000131634 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000131634 [Gene_View]  ENSG00000131634 [Sequence]  chr16:1533666-1555568 [Contig_View]  TMEM204 [Vega]
ICGC DataPortalENSG00000131634
TCGA cBioPortalTMEM204
AceView (NCBI)TMEM204
Genatlas (Paris)TMEM204
SOURCE (Princeton)TMEM204
Genetics Home Reference (NIH)TMEM204
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM204  -     chr16:1533666-1555568 +  16p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM204  -     16p13.3   [Description]    (hg19-Feb_2009)
GoldenPathTMEM204 - 16p13.3 [CytoView hg19]  TMEM204 - 16p13.3 [CytoView hg38]
ImmunoBaseENSG00000131634
Genome Data Viewer NCBITMEM204 [Mapview hg19]  
OMIM611002   
Gene and transcription
Genbank (Entrez)AK024551 AY358178 AY676494 BC004932 BC020425
RefSeq transcript (Entrez)NM_001256541 NM_024600
Consensus coding sequences : CCDS (NCBI)TMEM204
Gene ExpressionTMEM204 [ NCBI-GEO ]   TMEM204 [ EBI - ARRAY_EXPRESS ]   TMEM204 [ SEEK ]   TMEM204 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM204 [ Firebrowse - Broad ]
GenevisibleExpression of TMEM204 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79652
GTEX Portal (Tissue expression)TMEM204
Human Protein AtlasENSG00000131634-TMEM204 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BSN7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BSN7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BSN7
PhosPhoSitePlusQ9BSN7
Domains : Interpro (EBI)TMEM204   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TMEM204
SuperfamilyQ9BSN7
AlphaFold pdb e-kbQ9BSN7   
Human Protein Atlas [tissue]ENSG00000131634-TMEM204 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q9BSN7
IntAct (EBI)Q9BSN7
BioGRIDTMEM204
STRING (EMBL)TMEM204
ZODIACTMEM204
Ontologies - Pathways
QuickGOQ9BSN7
Ontology : AmiGOlymph vessel development  plasma membrane  adherens junction  integral component of membrane  regulation of vascular endothelial growth factor receptor signaling pathway  smooth muscle cell differentiation  
Ontology : EGO-EBIlymph vessel development  plasma membrane  adherens junction  integral component of membrane  regulation of vascular endothelial growth factor receptor signaling pathway  smooth muscle cell differentiation  
NDEx NetworkTMEM204
Atlas of Cancer Signalling NetworkTMEM204
Wikipedia pathwaysTMEM204
Orthology - Evolution
OrthoDB79652
GeneTree (enSembl)ENSG00000131634
Phylogenetic Trees/Animal Genes : TreeFamTMEM204
Homologs : HomoloGeneTMEM204
Homology/Alignments : Family Browser (UCSC)TMEM204
Gene fusions - Rearrangements
Fusion : QuiverTMEM204
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM204 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM204
dbVarTMEM204
ClinVarTMEM204
MonarchTMEM204
1000_GenomesTMEM204 
Exome Variant ServerTMEM204
GNOMAD BrowserENSG00000131634
Varsome BrowserTMEM204
ACMGTMEM204 variants
VarityQ9BSN7
Genomic Variants (DGV)TMEM204 [DGVbeta]
DECIPHERTMEM204 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM204 
Mutations
ICGC Data PortalTMEM204 
TCGA Data PortalTMEM204 
Broad Tumor PortalTMEM204
OASIS PortalTMEM204 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM204  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTMEM204
Mutations and Diseases : HGMDTMEM204
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTMEM204
DgiDB (Drug Gene Interaction Database)TMEM204
DoCM (Curated mutations)TMEM204
CIViC (Clinical Interpretations of Variants in Cancer)TMEM204
Cancer3DTMEM204
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611002   
Orphanet
DisGeNETTMEM204
MedgenTMEM204
Genetic Testing Registry TMEM204
NextProtQ9BSN7 [Medical]
GENETestsTMEM204
Target ValidationTMEM204
Huge Navigator TMEM204 [HugePedia]
ClinGenTMEM204
Clinical trials, drugs, therapy
MyCancerGenomeTMEM204
Protein Interactions : CTDTMEM204
Pharm GKB GenePA162406384
PharosQ9BSN7
Clinical trialTMEM204
Miscellaneous
canSAR (ICR)TMEM204
HarmonizomeTMEM204
DataMed IndexTMEM204
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTMEM204
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 16:25:59 CEST 2021

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.