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TMEM206 (transmembrane protein 206)

Identity

Alias_namesC1orf75
chromosome 1 open reading frame 75
Alias_symbol (synonym)FLJ10874
Other alias
HGNC (Hugo) TMEM206
LocusID (NCBI) 55248
Atlas_Id 54710
Location 1q32.3  [Link to chromosome band 1q32]
Location_base_pair Starts at 212364474 and ends at 212414901 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
TMEM206 (1q32.3) / PSAP (10q22.1)TMEM206 (1q32.3) / RCOR3 (1q32.2)TMEM206 1q32.3 / RCOR3 1q32.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  Lung: Translocations in Squamous Cell Carcinoma


External links

Nomenclature
HGNC (Hugo)TMEM206   25593
Cards
Entrez_Gene (NCBI)TMEM206  55248  transmembrane protein 206
AliasesC1orf75
GeneCards (Weizmann)TMEM206
Ensembl hg19 (Hinxton)ENSG00000065600 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000065600 [Gene_View]  chr1:212364474-212414901 [Contig_View]  TMEM206 [Vega]
ICGC DataPortalENSG00000065600
TCGA cBioPortalTMEM206
AceView (NCBI)TMEM206
Genatlas (Paris)TMEM206
WikiGenes55248
SOURCE (Princeton)TMEM206
Genetics Home Reference (NIH)TMEM206
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM206  -     chr1:212364474-212414901 -  1q32.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM206  -     1q32.3   [Description]    (hg19-Feb_2009)
EnsemblTMEM206 - 1q32.3 [CytoView hg19]  TMEM206 - 1q32.3 [CytoView hg38]
Mapping of homologs : NCBITMEM206 [Mapview hg19]  TMEM206 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK001736 AK024066 AK295224 AK297200 BC006320
RefSeq transcript (Entrez)NM_001198862 NM_018252
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMEM206
Cluster EST : UnigeneHs.445386 [ NCBI ]
CGAP (NCI)Hs.445386
Alternative Splicing GalleryENSG00000065600
Gene ExpressionTMEM206 [ NCBI-GEO ]   TMEM206 [ EBI - ARRAY_EXPRESS ]   TMEM206 [ SEEK ]   TMEM206 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM206 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55248
GTEX Portal (Tissue expression)TMEM206
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H813   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H813  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H813
Splice isoforms : SwissVarQ9H813
PhosPhoSitePlusQ9H813
Domains : Interpro (EBI)TMEM206   
Domain families : Pfam (Sanger)TMEM206 (PF15122)   
Domain families : Pfam (NCBI)pfam15122   
Conserved Domain (NCBI)TMEM206
DMDM Disease mutations55248
Blocks (Seattle)TMEM206
SuperfamilyQ9H813
Human Protein AtlasENSG00000065600
Peptide AtlasQ9H813
HPRD07707
IPIIPI00303401   IPI00980690   
Protein Interaction databases
DIP (DOE-UCLA)Q9H813
IntAct (EBI)Q9H813
FunCoupENSG00000065600
BioGRIDTMEM206
STRING (EMBL)TMEM206
ZODIACTMEM206
Ontologies - Pathways
QuickGOQ9H813
Ontology : AmiGOcell surface  integral component of membrane  
Ontology : EGO-EBIcell surface  integral component of membrane  
NDEx NetworkTMEM206
Atlas of Cancer Signalling NetworkTMEM206
Wikipedia pathwaysTMEM206
Orthology - Evolution
OrthoDB55248
GeneTree (enSembl)ENSG00000065600
Phylogenetic Trees/Animal Genes : TreeFamTMEM206
HOVERGENQ9H813
HOGENOMQ9H813
Homologs : HomoloGeneTMEM206
Homology/Alignments : Family Browser (UCSC)TMEM206
Gene fusions - Rearrangements
Fusion : MitelmanTMEM206/PSAP [1q32.3/10q22.1]  
Fusion : MitelmanTMEM206/RCOR3 [1q32.3/1q32.2]  [t(1;1)(q32;q32)]  
Fusion: TCGATMEM206 1q32.3 RCOR3 1q32.2 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM206 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM206
dbVarTMEM206
ClinVarTMEM206
1000_GenomesTMEM206 
Exome Variant ServerTMEM206
ExAC (Exome Aggregation Consortium)TMEM206 (select the gene name)
Genetic variants : HAPMAP55248
Genomic Variants (DGV)TMEM206 [DGVbeta]
DECIPHERTMEM206 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM206 
Mutations
ICGC Data PortalTMEM206 
TCGA Data PortalTMEM206 
Broad Tumor PortalTMEM206
OASIS PortalTMEM206 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM206  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM206
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM206
DgiDB (Drug Gene Interaction Database)TMEM206
DoCM (Curated mutations)TMEM206 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM206 (select a term)
intoGenTMEM206
Cancer3DTMEM206(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTMEM206
Genetic Testing Registry TMEM206
NextProtQ9H813 [Medical]
TSGene55248
GENETestsTMEM206
Target ValidationTMEM206
Huge Navigator TMEM206 [HugePedia]
snp3D : Map Gene to Disease55248
BioCentury BCIQTMEM206
ClinGenTMEM206
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55248
Chemical/Pharm GKB GenePA162406386
Clinical trialTMEM206
Miscellaneous
canSAR (ICR)TMEM206 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM206
EVEXTMEM206
GoPubMedTMEM206
iHOPTMEM206
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 12:59:44 CEST 2017

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