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TMEM207 (transmembrane protein 207)

Identity

Other aliasUNQ846
HGNC (Hugo) TMEM207
LocusID (NCBI) 131920
Atlas_Id 52696
Location 3q28  [Link to chromosome band 3q28]
Location_base_pair Starts at 190146445 and ends at 190167665 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
IL1RAP (3q28) / TMEM207 (3q28)TMEM207 (3q28) / FMR1 (Xq27.3)IL1RAP 3q28 / TMEM207 3q28

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM207   33705
Cards
Entrez_Gene (NCBI)TMEM207  131920  transmembrane protein 207
AliasesUNQ846
GeneCards (Weizmann)TMEM207
Ensembl hg19 (Hinxton)ENSG00000198398 [Gene_View]  chr3:190146445-190167665 [Contig_View]  TMEM207 [Vega]
Ensembl hg38 (Hinxton)ENSG00000198398 [Gene_View]  chr3:190146445-190167665 [Contig_View]  TMEM207 [Vega]
ICGC DataPortalENSG00000198398
TCGA cBioPortalTMEM207
AceView (NCBI)TMEM207
Genatlas (Paris)TMEM207
WikiGenes131920
SOURCE (Princeton)TMEM207
Genetics Home Reference (NIH)TMEM207
Genomic and cartography
GoldenPath hg19 (UCSC)TMEM207  -     chr3:190146445-190167665 -  3q28   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TMEM207  -     3q28   [Description]    (hg38-Dec_2013)
EnsemblTMEM207 - 3q28 [CytoView hg19]  TMEM207 - 3q28 [CytoView hg38]
Mapping of homologs : NCBITMEM207 [Mapview hg19]  TMEM207 [Mapview hg38]
OMIM614786   
Gene and transcription
Genbank (Entrez)AI762254 AY358607 BC071780 HQ447515
RefSeq transcript (Entrez)NM_207316
RefSeq genomic (Entrez)NC_000003 NC_018914 NT_005612 NW_004929311
Consensus coding sequences : CCDS (NCBI)TMEM207
Cluster EST : UnigeneHs.335321 [ NCBI ]
CGAP (NCI)Hs.335321
Alternative Splicing GalleryENSG00000198398
Gene ExpressionTMEM207 [ NCBI-GEO ]   TMEM207 [ EBI - ARRAY_EXPRESS ]   TMEM207 [ SEEK ]   TMEM207 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM207 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)131920
GTEX Portal (Tissue expression)TMEM207
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6UWW9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6UWW9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6UWW9
Splice isoforms : SwissVarQ6UWW9
PhosPhoSitePlusQ6UWW9
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TMEM207
DMDM Disease mutations131920
Blocks (Seattle)TMEM207
SuperfamilyQ6UWW9
Human Protein AtlasENSG00000198398
Peptide AtlasQ6UWW9
HPRD15621
IPIIPI00047105   
Protein Interaction databases
DIP (DOE-UCLA)Q6UWW9
IntAct (EBI)Q6UWW9
FunCoupENSG00000198398
BioGRIDTMEM207
STRING (EMBL)TMEM207
ZODIACTMEM207
Ontologies - Pathways
QuickGOQ6UWW9
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkTMEM207
Atlas of Cancer Signalling NetworkTMEM207
Wikipedia pathwaysTMEM207
Orthology - Evolution
OrthoDB131920
GeneTree (enSembl)ENSG00000198398
Phylogenetic Trees/Animal Genes : TreeFamTMEM207
HOVERGENQ6UWW9
HOGENOMQ6UWW9
Homologs : HomoloGeneTMEM207
Homology/Alignments : Family Browser (UCSC)TMEM207
Gene fusions - Rearrangements
Fusion: TCGAIL1RAP 3q28 TMEM207 3q28 LUSC
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM207 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM207
dbVarTMEM207
ClinVarTMEM207
1000_GenomesTMEM207 
Exome Variant ServerTMEM207
ExAC (Exome Aggregation Consortium)TMEM207 (select the gene name)
Genetic variants : HAPMAP131920
Genomic Variants (DGV)TMEM207 [DGVbeta]
DECIPHER (Syndromes)3:190146445-190167665  ENSG00000198398
CONAN: Copy Number AnalysisTMEM207 
Mutations
ICGC Data PortalTMEM207 
TCGA Data PortalTMEM207 
Broad Tumor PortalTMEM207
OASIS PortalTMEM207 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM207  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM207
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM207
DgiDB (Drug Gene Interaction Database)TMEM207
DoCM (Curated mutations)TMEM207 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM207 (select a term)
intoGenTMEM207
Cancer3DTMEM207(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614786   
Orphanet
MedgenTMEM207
Genetic Testing Registry TMEM207
NextProtQ6UWW9 [Medical]
TSGene131920
GENETestsTMEM207
Huge Navigator TMEM207 [HugePedia]
snp3D : Map Gene to Disease131920
BioCentury BCIQTMEM207
ClinGenTMEM207
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD131920
Chemical/Pharm GKB GenePA162406407
Clinical trialTMEM207
Miscellaneous
canSAR (ICR)TMEM207 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM207
EVEXTMEM207
GoPubMedTMEM207
iHOPTMEM207
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:31:28 CET 2017

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