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TMEM208 (transmembrane protein 208)

Identity

Alias_symbol (synonym)HSPC171
Other alias
HGNC (Hugo) TMEM208
LocusID (NCBI) 29100
Atlas_Id 74874
Location 16q22.1  [Link to chromosome band 16q22]
Location_base_pair Starts at 67227113 and ends at 67229279 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TMEM208 (16q22.1) / PLOD1 (1p36.22)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM208   25015
Cards
Entrez_Gene (NCBI)TMEM208  29100  transmembrane protein 208
AliasesHSPC171
GeneCards (Weizmann)TMEM208
Ensembl hg19 (Hinxton)ENSG00000168701 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000168701 [Gene_View]  chr16:67227113-67229279 [Contig_View]  TMEM208 [Vega]
ICGC DataPortalENSG00000168701
TCGA cBioPortalTMEM208
AceView (NCBI)TMEM208
Genatlas (Paris)TMEM208
WikiGenes29100
SOURCE (Princeton)TMEM208
Genetics Home Reference (NIH)TMEM208
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM208  -     chr16:67227113-67229279 +  16q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM208  -     16q22.1   [Description]    (hg19-Feb_2009)
EnsemblTMEM208 - 16q22.1 [CytoView hg19]  TMEM208 - 16q22.1 [CytoView hg38]
Mapping of homologs : NCBITMEM208 [Mapview hg19]  TMEM208 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF161519 BC003080 BC013412 BC021109 BF316569
RefSeq transcript (Entrez)NM_001318217 NM_014187
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMEM208
Cluster EST : UnigeneHs.433203 [ NCBI ]
CGAP (NCI)Hs.433203
Alternative Splicing GalleryENSG00000168701
Gene ExpressionTMEM208 [ NCBI-GEO ]   TMEM208 [ EBI - ARRAY_EXPRESS ]   TMEM208 [ SEEK ]   TMEM208 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM208 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)29100
GTEX Portal (Tissue expression)TMEM208
Human Protein AtlasENSG00000168701-TMEM208 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BTX3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BTX3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BTX3
Splice isoforms : SwissVarQ9BTX3
PhosPhoSitePlusQ9BTX3
Domains : Interpro (EBI)DUF788_TMEM208   
Domain families : Pfam (Sanger)DUF788 (PF05620)   
Domain families : Pfam (NCBI)pfam05620   
Conserved Domain (NCBI)TMEM208
DMDM Disease mutations29100
Blocks (Seattle)TMEM208
SuperfamilyQ9BTX3
Human Protein Atlas [tissue]ENSG00000168701-TMEM208 [tissue]
Peptide AtlasQ9BTX3
HPRD13710
IPIIPI00549408   IPI00647208   
Protein Interaction databases
DIP (DOE-UCLA)Q9BTX3
IntAct (EBI)Q9BTX3
FunCoupENSG00000168701
BioGRIDTMEM208
STRING (EMBL)TMEM208
ZODIACTMEM208
Ontologies - Pathways
QuickGOQ9BTX3
Ontology : AmiGOvacuole  endoplasmic reticulum membrane  vacuolar protein processing  autophagy  integral component of membrane  
Ontology : EGO-EBIvacuole  endoplasmic reticulum membrane  vacuolar protein processing  autophagy  integral component of membrane  
NDEx NetworkTMEM208
Atlas of Cancer Signalling NetworkTMEM208
Wikipedia pathwaysTMEM208
Orthology - Evolution
OrthoDB29100
GeneTree (enSembl)ENSG00000168701
Phylogenetic Trees/Animal Genes : TreeFamTMEM208
HOVERGENQ9BTX3
HOGENOMQ9BTX3
Homologs : HomoloGeneTMEM208
Homology/Alignments : Family Browser (UCSC)TMEM208
Gene fusions - Rearrangements
Tumor Fusion PortalTMEM208
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM208 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM208
dbVarTMEM208
ClinVarTMEM208
1000_GenomesTMEM208 
Exome Variant ServerTMEM208
ExAC (Exome Aggregation Consortium)ENSG00000168701
GNOMAD BrowserENSG00000168701
Genetic variants : HAPMAP29100
Genomic Variants (DGV)TMEM208 [DGVbeta]
DECIPHERTMEM208 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM208 
Mutations
ICGC Data PortalTMEM208 
TCGA Data PortalTMEM208 
Broad Tumor PortalTMEM208
OASIS PortalTMEM208 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM208  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM208
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM208
DgiDB (Drug Gene Interaction Database)TMEM208
DoCM (Curated mutations)TMEM208 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM208 (select a term)
intoGenTMEM208
Cancer3DTMEM208(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTMEM208
MedgenTMEM208
Genetic Testing Registry TMEM208
NextProtQ9BTX3 [Medical]
TSGene29100
GENETestsTMEM208
Target ValidationTMEM208
Huge Navigator TMEM208 [HugePedia]
snp3D : Map Gene to Disease29100
BioCentury BCIQTMEM208
ClinGenTMEM208
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD29100
Chemical/Pharm GKB GenePA162406408
Clinical trialTMEM208
Miscellaneous
canSAR (ICR)TMEM208 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM208
EVEXTMEM208
GoPubMedTMEM208
iHOPTMEM208
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:34:33 CET 2017

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