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TMEM213 (transmembrane protein 213)

Identity

Other alias-
HGNC (Hugo) TMEM213
LocusID (NCBI) 155006
Atlas_Id 74879
Location 7q34  [Link to chromosome band 7q34]
Location_base_pair Starts at 138797994 and ends at 138806026 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM213   27220
Cards
Entrez_Gene (NCBI)TMEM213  155006  transmembrane protein 213
Aliases
GeneCards (Weizmann)TMEM213
Ensembl hg19 (Hinxton)ENSG00000214128 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000214128 [Gene_View]  chr7:138797994-138806026 [Contig_View]  TMEM213 [Vega]
ICGC DataPortalENSG00000214128
TCGA cBioPortalTMEM213
AceView (NCBI)TMEM213
Genatlas (Paris)TMEM213
WikiGenes155006
SOURCE (Princeton)TMEM213
Genetics Home Reference (NIH)TMEM213
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM213  -     chr7:138797994-138806026 +  7q34   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM213  -     7q34   [Description]    (hg19-Feb_2009)
EnsemblTMEM213 - 7q34 [CytoView hg19]  TMEM213 - 7q34 [CytoView hg38]
Mapping of homologs : NCBITMEM213 [Mapview hg19]  TMEM213 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI672404 AK055760 AK055841 AW771283 BC058028
RefSeq transcript (Entrez)NM_001085429
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMEM213
Cluster EST : UnigeneHs.567729 [ NCBI ]
CGAP (NCI)Hs.567729
Alternative Splicing GalleryENSG00000214128
Gene ExpressionTMEM213 [ NCBI-GEO ]   TMEM213 [ EBI - ARRAY_EXPRESS ]   TMEM213 [ SEEK ]   TMEM213 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM213 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)155006
GTEX Portal (Tissue expression)TMEM213
Protein : pattern, domain, 3D structure
UniProt/SwissProtA2RRL7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA2RRL7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA2RRL7
Splice isoforms : SwissVarA2RRL7
PhosPhoSitePlusA2RRL7
Domains : Interpro (EBI)TMEM213   
Domain families : Pfam (Sanger)TMEM213 (PF15192)   
Domain families : Pfam (NCBI)pfam15192   
Conserved Domain (NCBI)TMEM213
DMDM Disease mutations155006
Blocks (Seattle)TMEM213
SuperfamilyA2RRL7
Human Protein AtlasENSG00000214128
Peptide AtlasA2RRL7
IPIIPI00940418   IPI00927678   IPI01010906   IPI00927889   IPI00401190   
Protein Interaction databases
DIP (DOE-UCLA)A2RRL7
IntAct (EBI)A2RRL7
FunCoupENSG00000214128
BioGRIDTMEM213
STRING (EMBL)TMEM213
ZODIACTMEM213
Ontologies - Pathways
QuickGOA2RRL7
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkTMEM213
Atlas of Cancer Signalling NetworkTMEM213
Wikipedia pathwaysTMEM213
Orthology - Evolution
OrthoDB155006
GeneTree (enSembl)ENSG00000214128
Phylogenetic Trees/Animal Genes : TreeFamTMEM213
HOVERGENA2RRL7
HOGENOMA2RRL7
Homologs : HomoloGeneTMEM213
Homology/Alignments : Family Browser (UCSC)TMEM213
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM213 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM213
dbVarTMEM213
ClinVarTMEM213
1000_GenomesTMEM213 
Exome Variant ServerTMEM213
ExAC (Exome Aggregation Consortium)TMEM213 (select the gene name)
Genetic variants : HAPMAP155006
Genomic Variants (DGV)TMEM213 [DGVbeta]
DECIPHERTMEM213 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM213 
Mutations
ICGC Data PortalTMEM213 
TCGA Data PortalTMEM213 
Broad Tumor PortalTMEM213
OASIS PortalTMEM213 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM213  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM213
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM213
DgiDB (Drug Gene Interaction Database)TMEM213
DoCM (Curated mutations)TMEM213 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM213 (select a term)
intoGenTMEM213
Cancer3DTMEM213(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTMEM213
Genetic Testing Registry TMEM213
NextProtA2RRL7 [Medical]
TSGene155006
GENETestsTMEM213
Target ValidationTMEM213
Huge Navigator TMEM213 [HugePedia]
snp3D : Map Gene to Disease155006
BioCentury BCIQTMEM213
ClinGenTMEM213
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD155006
Chemical/Pharm GKB GenePA162406494
Clinical trialTMEM213
Miscellaneous
canSAR (ICR)TMEM213 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM213
EVEXTMEM213
GoPubMedTMEM213
iHOPTMEM213
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:46:07 CEST 2017

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