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TMEM219 (transmembrane protein 219)

Identity

Other aliasIGFBP-3R
HGNC (Hugo) TMEM219
LocusID (NCBI) 124446
Atlas_Id 74885
Location 16p11.2  [Link to chromosome band 16p11]
Location_base_pair Starts at 29962030 and ends at 29973052 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
TMEM219 (16p11.2) / TAOK2 (16p11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM219   25201
Cards
Entrez_Gene (NCBI)TMEM219  124446  transmembrane protein 219
AliasesIGFBP-3R
GeneCards (Weizmann)TMEM219
Ensembl hg19 (Hinxton)ENSG00000149932 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000149932 [Gene_View]  chr16:29962030-29973052 [Contig_View]  TMEM219 [Vega]
ICGC DataPortalENSG00000149932
TCGA cBioPortalTMEM219
AceView (NCBI)TMEM219
Genatlas (Paris)TMEM219
WikiGenes124446
SOURCE (Princeton)TMEM219
Genetics Home Reference (NIH)TMEM219
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM219  -     chr16:29962030-29973052 +  16p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM219  -     16p11.2   [Description]    (hg19-Feb_2009)
EnsemblTMEM219 - 16p11.2 [CytoView hg19]  TMEM219 - 16p11.2 [CytoView hg38]
Mapping of homologs : NCBITMEM219 [Mapview hg19]  TMEM219 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC017488 BC031217 BC050051 BF724791 BU857546
RefSeq transcript (Entrez)NM_001083613 NM_194280
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMEM219
Cluster EST : UnigeneHs.460574 [ NCBI ]
CGAP (NCI)Hs.460574
Alternative Splicing GalleryENSG00000149932
Gene ExpressionTMEM219 [ NCBI-GEO ]   TMEM219 [ EBI - ARRAY_EXPRESS ]   TMEM219 [ SEEK ]   TMEM219 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM219 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)124446
GTEX Portal (Tissue expression)TMEM219
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86XT9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86XT9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86XT9
Splice isoforms : SwissVarQ86XT9
PhosPhoSitePlusQ86XT9
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TMEM219
DMDM Disease mutations124446
Blocks (Seattle)TMEM219
SuperfamilyQ86XT9
Human Protein AtlasENSG00000149932
Peptide AtlasQ86XT9
HPRD18546
IPIIPI00056329   
Protein Interaction databases
DIP (DOE-UCLA)Q86XT9
IntAct (EBI)Q86XT9
FunCoupENSG00000149932
BioGRIDTMEM219
STRING (EMBL)TMEM219
ZODIACTMEM219
Ontologies - Pathways
QuickGOQ86XT9
Ontology : AmiGOplasma membrane  apoptotic process  integral component of membrane  regulation of apoptotic process  
Ontology : EGO-EBIplasma membrane  apoptotic process  integral component of membrane  regulation of apoptotic process  
NDEx NetworkTMEM219
Atlas of Cancer Signalling NetworkTMEM219
Wikipedia pathwaysTMEM219
Orthology - Evolution
OrthoDB124446
GeneTree (enSembl)ENSG00000149932
Phylogenetic Trees/Animal Genes : TreeFamTMEM219
HOVERGENQ86XT9
HOGENOMQ86XT9
Homologs : HomoloGeneTMEM219
Homology/Alignments : Family Browser (UCSC)TMEM219
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM219 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM219
dbVarTMEM219
ClinVarTMEM219
1000_GenomesTMEM219 
Exome Variant ServerTMEM219
ExAC (Exome Aggregation Consortium)TMEM219 (select the gene name)
Genetic variants : HAPMAP124446
Genomic Variants (DGV)TMEM219 [DGVbeta]
DECIPHERTMEM219 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM219 
Mutations
ICGC Data PortalTMEM219 
TCGA Data PortalTMEM219 
Broad Tumor PortalTMEM219
OASIS PortalTMEM219 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM219  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM219
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM219
DgiDB (Drug Gene Interaction Database)TMEM219
DoCM (Curated mutations)TMEM219 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM219 (select a term)
intoGenTMEM219
Cancer3DTMEM219(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTMEM219
Genetic Testing Registry TMEM219
NextProtQ86XT9 [Medical]
TSGene124446
GENETestsTMEM219
Target ValidationTMEM219
Huge Navigator TMEM219 [HugePedia]
snp3D : Map Gene to Disease124446
BioCentury BCIQTMEM219
ClinGenTMEM219
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD124446
Chemical/Pharm GKB GenePA162406570
Clinical trialTMEM219
Miscellaneous
canSAR (ICR)TMEM219 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM219
EVEXTMEM219
GoPubMedTMEM219
iHOPTMEM219
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:41:51 CEST 2017

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