Atlas of Genetics and Cytogenetics in Oncology and Haematology


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TMEM220-AS1 (TMEM220 antisense RNA 1)

Identity

Other alias-
HGNC (Hugo) TMEM220-AS1
LocusID (NCBI) 101101775
Atlas_Id 74887
Location 17p13.1  [Link to chromosome band 17p13]
Location_base_pair Starts at 10729777 and ends at 10767052 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM220-AS1   44357
Cards
Entrez_Gene (NCBI)TMEM220-AS1  101101775  TMEM220 antisense RNA 1
Aliases
GeneCards (Weizmann)TMEM220-AS1
Ensembl hg19 (Hinxton)ENSG00000263400 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000263400 [Gene_View]  chr17:10729777-10767052 [Contig_View]  TMEM220-AS1 [Vega]
ICGC DataPortalENSG00000263400
TCGA cBioPortalTMEM220-AS1
AceView (NCBI)TMEM220-AS1
Genatlas (Paris)TMEM220-AS1
WikiGenes101101775
SOURCE (Princeton)TMEM220-AS1
Genetics Home Reference (NIH)TMEM220-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM220-AS1  -     chr17:10729777-10767052 +  17p13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM220-AS1  -     17p13.1   [Description]    (hg19-Feb_2009)
EnsemblTMEM220-AS1 - 17p13.1 [CytoView hg19]  TMEM220-AS1 - 17p13.1 [CytoView hg38]
Mapping of homologs : NCBITMEM220-AS1 [Mapview hg19]  TMEM220-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BQ694074 BQ694934 DA035282 DA190285 DA747858
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMEM220-AS1
Cluster EST : UnigeneHs.627844 [ NCBI ]
CGAP (NCI)Hs.627844
Alternative Splicing GalleryENSG00000263400
Gene ExpressionTMEM220-AS1 [ NCBI-GEO ]   TMEM220-AS1 [ EBI - ARRAY_EXPRESS ]   TMEM220-AS1 [ SEEK ]   TMEM220-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM220-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101101775
GTEX Portal (Tissue expression)TMEM220-AS1
Human Protein AtlasENSG00000263400-TMEM220-AS1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TMEM220-AS1
DMDM Disease mutations101101775
Blocks (Seattle)TMEM220-AS1
Human Protein Atlas [tissue]ENSG00000263400-TMEM220-AS1 [tissue]
Protein Interaction databases
FunCoupENSG00000263400
BioGRIDTMEM220-AS1
STRING (EMBL)TMEM220-AS1
ZODIACTMEM220-AS1
Ontologies - Pathways
Huge Navigator TMEM220-AS1 [HugePedia]
snp3D : Map Gene to Disease101101775
BioCentury BCIQTMEM220-AS1
ClinGenTMEM220-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101101775
Clinical trialTMEM220-AS1
Miscellaneous
canSAR (ICR)TMEM220-AS1 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM220-AS1
EVEXTMEM220-AS1
GoPubMedTMEM220-AS1
iHOPTMEM220-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:37:07 CET 2017

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