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TMEM220 (transmembrane protein 220)

Identity

Alias (NCBI)-
HGNC (Hugo) TMEM220
LocusID (NCBI) 388335
Atlas_Id 56891
Location 17p13.1  [Link to chromosome band 17p13]
Location_base_pair Starts at 10711136 and ends at 10730329 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TMEM220   33757
Cards
Entrez_Gene (NCBI)TMEM220    transmembrane protein 220
Aliases
GeneCards (Weizmann)TMEM220
Ensembl hg19 (Hinxton)ENSG00000187824 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000187824 [Gene_View]  ENSG00000187824 [Sequence]  chr17:10711136-10730329 [Contig_View]  TMEM220 [Vega]
ICGC DataPortalENSG00000187824
TCGA cBioPortalTMEM220
AceView (NCBI)TMEM220
Genatlas (Paris)TMEM220
SOURCE (Princeton)TMEM220
Genetics Home Reference (NIH)TMEM220
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM220  -     chr17:10711136-10730329 -  17p13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM220  -     17p13.1   [Description]    (hg19-Feb_2009)
GoldenPathTMEM220 - 17p13.1 [CytoView hg19]  TMEM220 - 17p13.1 [CytoView hg38]
ImmunoBaseENSG00000187824
Genome Data Viewer NCBITMEM220 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK289624 AK295928 AY550194 BC127705 BC136838
RefSeq transcript (Entrez)NM_001004313 NM_001330139 NM_001330140 NM_001359647
Consensus coding sequences : CCDS (NCBI)TMEM220
Gene ExpressionTMEM220 [ NCBI-GEO ]   TMEM220 [ EBI - ARRAY_EXPRESS ]   TMEM220 [ SEEK ]   TMEM220 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM220 [ Firebrowse - Broad ]
GenevisibleExpression of TMEM220 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)388335
GTEX Portal (Tissue expression)TMEM220
Human Protein AtlasENSG00000187824-TMEM220 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6QAJ8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6QAJ8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6QAJ8
PhosPhoSitePlusQ6QAJ8
Domains : Interpro (EBI)TMEM220   
Domain families : Pfam (Sanger)TMEM220 (PF15071)   
Domain families : Pfam (NCBI)pfam15071   
Conserved Domain (NCBI)TMEM220
SuperfamilyQ6QAJ8
AlphaFold pdb e-kbQ6QAJ8   
Human Protein Atlas [tissue]ENSG00000187824-TMEM220 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q6QAJ8
IntAct (EBI)Q6QAJ8
BioGRIDTMEM220
STRING (EMBL)TMEM220
ZODIACTMEM220
Ontologies - Pathways
QuickGOQ6QAJ8
Ontology : AmiGOprotein binding  integral component of membrane  
Ontology : EGO-EBIprotein binding  integral component of membrane  
NDEx NetworkTMEM220
Atlas of Cancer Signalling NetworkTMEM220
Wikipedia pathwaysTMEM220
Orthology - Evolution
OrthoDB388335
GeneTree (enSembl)ENSG00000187824
Phylogenetic Trees/Animal Genes : TreeFamTMEM220
Homologs : HomoloGeneTMEM220
Homology/Alignments : Family Browser (UCSC)TMEM220
Gene fusions - Rearrangements
Fusion : QuiverTMEM220
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM220 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM220
dbVarTMEM220
ClinVarTMEM220
MonarchTMEM220
1000_GenomesTMEM220 
Exome Variant ServerTMEM220
GNOMAD BrowserENSG00000187824
Varsome BrowserTMEM220
ACMGTMEM220 variants
VarityQ6QAJ8
Genomic Variants (DGV)TMEM220 [DGVbeta]
DECIPHERTMEM220 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM220 
Mutations
ICGC Data PortalTMEM220 
TCGA Data PortalTMEM220 
Broad Tumor PortalTMEM220
OASIS PortalTMEM220 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM220  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTMEM220
Mutations and Diseases : HGMDTMEM220
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTMEM220
DgiDB (Drug Gene Interaction Database)TMEM220
DoCM (Curated mutations)TMEM220
CIViC (Clinical Interpretations of Variants in Cancer)TMEM220
Cancer3DTMEM220
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTMEM220
MedgenTMEM220
Genetic Testing Registry TMEM220
NextProtQ6QAJ8 [Medical]
GENETestsTMEM220
Target ValidationTMEM220
Huge Navigator TMEM220 [HugePedia]
ClinGenTMEM220
Clinical trials, drugs, therapy
MyCancerGenomeTMEM220
Protein Interactions : CTDTMEM220
Pharm GKB GenePA162406587
PharosQ6QAJ8
Clinical trialTMEM220
Miscellaneous
canSAR (ICR)TMEM220
HarmonizomeTMEM220
DataMed IndexTMEM220
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTMEM220
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 15:35:29 CEST 2021

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