Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TMEM220 (transmembrane protein 220)

Identity

Other alias-
HGNC (Hugo) TMEM220
LocusID (NCBI) 388335
Atlas_Id 56891
Location 17p13.1  [Link to chromosome band 17p13]
Location_base_pair Starts at 10713322 and ends at 10730329 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM220   33757
Cards
Entrez_Gene (NCBI)TMEM220  388335  transmembrane protein 220
Aliases
GeneCards (Weizmann)TMEM220
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr17:10713322-10730329 [Contig_View]  TMEM220 [Vega]
TCGA cBioPortalTMEM220
AceView (NCBI)TMEM220
Genatlas (Paris)TMEM220
WikiGenes388335
SOURCE (Princeton)TMEM220
Genetics Home Reference (NIH)TMEM220
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM220  -     chr17:10713322-10730329 -  17p13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM220  -     17p13.1   [Description]    (hg19-Feb_2009)
EnsemblTMEM220 - 17p13.1 [CytoView hg19]  TMEM220 - 17p13.1 [CytoView hg38]
Mapping of homologs : NCBITMEM220 [Mapview hg19]  TMEM220 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK289624 AK295928 AY550194 BC127705 BC136838
RefSeq transcript (Entrez)NM_001004313 NM_001330139 NM_001330140
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMEM220
Cluster EST : UnigeneHs.462230 [ NCBI ]
CGAP (NCI)Hs.462230
Gene ExpressionTMEM220 [ NCBI-GEO ]   TMEM220 [ EBI - ARRAY_EXPRESS ]   TMEM220 [ SEEK ]   TMEM220 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM220 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)388335
GTEX Portal (Tissue expression)TMEM220
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6QAJ8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6QAJ8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6QAJ8
Splice isoforms : SwissVarQ6QAJ8
PhosPhoSitePlusQ6QAJ8
Domains : Interpro (EBI)TMEM220   
Domain families : Pfam (Sanger)TMEM220 (PF15071)   
Domain families : Pfam (NCBI)pfam15071   
Conserved Domain (NCBI)TMEM220
DMDM Disease mutations388335
Blocks (Seattle)TMEM220
SuperfamilyQ6QAJ8
Peptide AtlasQ6QAJ8
IPIIPI00373884   IPI00885029   
Protein Interaction databases
DIP (DOE-UCLA)Q6QAJ8
IntAct (EBI)Q6QAJ8
BioGRIDTMEM220
STRING (EMBL)TMEM220
ZODIACTMEM220
Ontologies - Pathways
QuickGOQ6QAJ8
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkTMEM220
Atlas of Cancer Signalling NetworkTMEM220
Wikipedia pathwaysTMEM220
Orthology - Evolution
OrthoDB388335
Phylogenetic Trees/Animal Genes : TreeFamTMEM220
HOVERGENQ6QAJ8
HOGENOMQ6QAJ8
Homologs : HomoloGeneTMEM220
Homology/Alignments : Family Browser (UCSC)TMEM220
Gene fusions - Rearrangements
Fusion: Tumor Portal TMEM220
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM220 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM220
dbVarTMEM220
ClinVarTMEM220
1000_GenomesTMEM220 
Exome Variant ServerTMEM220
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP388335
Genomic Variants (DGV)TMEM220 [DGVbeta]
DECIPHERTMEM220 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM220 
Mutations
ICGC Data PortalTMEM220 
TCGA Data PortalTMEM220 
Broad Tumor PortalTMEM220
OASIS PortalTMEM220 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM220  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM220
BioMutasearch TMEM220
DgiDB (Drug Gene Interaction Database)TMEM220
DoCM (Curated mutations)TMEM220 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM220 (select a term)
intoGenTMEM220
Cancer3DTMEM220(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTMEM220
Genetic Testing Registry TMEM220
NextProtQ6QAJ8 [Medical]
TSGene388335
GENETestsTMEM220
Target ValidationTMEM220
Huge Navigator TMEM220 [HugePedia]
snp3D : Map Gene to Disease388335
BioCentury BCIQTMEM220
ClinGenTMEM220
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD388335
Chemical/Pharm GKB GenePA162406587
Clinical trialTMEM220
Miscellaneous
canSAR (ICR)TMEM220 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM220
EVEXTMEM220
GoPubMedTMEM220
iHOPTMEM220
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 13:14:52 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.