Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TMEM221 (transmembrane protein 221)

Identity

Alias (NCBI)-
HGNC (Hugo) TMEM221
LocusID (NCBI) 100130519
Atlas_Id 74888
Location 19p13.11  [Link to chromosome band 19p13]
Location_base_pair Starts at 17435509 and ends at 17448668 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TMEM221   21943
Cards
Entrez_Gene (NCBI)TMEM221    transmembrane protein 221
Aliases
GeneCards (Weizmann)TMEM221
Ensembl hg19 (Hinxton)ENSG00000188051 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000188051 [Gene_View]  ENSG00000188051 [Sequence]  chr19:17435509-17448668 [Contig_View]  TMEM221 [Vega]
ICGC DataPortalENSG00000188051
TCGA cBioPortalTMEM221
AceView (NCBI)TMEM221
Genatlas (Paris)TMEM221
SOURCE (Princeton)TMEM221
Genetics Home Reference (NIH)TMEM221
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM221  -     chr19:17435509-17448668 -  19p13.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM221  -     19p13.11   [Description]    (hg19-Feb_2009)
GoldenPathTMEM221 - 19p13.11 [CytoView hg19]  TMEM221 - 19p13.11 [CytoView hg38]
ImmunoBaseENSG00000188051
Genome Data Viewer NCBITMEM221 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)BC039402 BY797043
RefSeq transcript (Entrez)NM_001190844
Consensus coding sequences : CCDS (NCBI)TMEM221
Gene ExpressionTMEM221 [ NCBI-GEO ]   TMEM221 [ EBI - ARRAY_EXPRESS ]   TMEM221 [ SEEK ]   TMEM221 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM221 [ Firebrowse - Broad ]
GenevisibleExpression of TMEM221 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100130519
GTEX Portal (Tissue expression)TMEM221
Human Protein AtlasENSG00000188051-TMEM221 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NGB7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NGB7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NGB7
PhosPhoSitePlusA6NGB7
Domains : Interpro (EBI)Jiraiya   
Domain families : Pfam (Sanger)Jiraiya (PF15038)   
Domain families : Pfam (NCBI)pfam15038   
Conserved Domain (NCBI)TMEM221
SuperfamilyA6NGB7
AlphaFold pdb e-kbA6NGB7   
Human Protein Atlas [tissue]ENSG00000188051-TMEM221 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)A6NGB7
IntAct (EBI)A6NGB7
BioGRIDTMEM221
STRING (EMBL)TMEM221
ZODIACTMEM221
Ontologies - Pathways
QuickGOA6NGB7
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkTMEM221
Atlas of Cancer Signalling NetworkTMEM221
Wikipedia pathwaysTMEM221
Orthology - Evolution
OrthoDB100130519
GeneTree (enSembl)ENSG00000188051
Phylogenetic Trees/Animal Genes : TreeFamTMEM221
Homologs : HomoloGeneTMEM221
Homology/Alignments : Family Browser (UCSC)TMEM221
Gene fusions - Rearrangements
Fusion : QuiverTMEM221
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM221 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM221
dbVarTMEM221
ClinVarTMEM221
MonarchTMEM221
1000_GenomesTMEM221 
Exome Variant ServerTMEM221
GNOMAD BrowserENSG00000188051
Varsome BrowserTMEM221
ACMGTMEM221 variants
VarityA6NGB7
Genomic Variants (DGV)TMEM221 [DGVbeta]
DECIPHERTMEM221 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM221 
Mutations
ICGC Data PortalTMEM221 
TCGA Data PortalTMEM221 
Broad Tumor PortalTMEM221
OASIS PortalTMEM221 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM221  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTMEM221
Mutations and Diseases : HGMDTMEM221
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTMEM221
DgiDB (Drug Gene Interaction Database)TMEM221
DoCM (Curated mutations)TMEM221
CIViC (Clinical Interpretations of Variants in Cancer)TMEM221
Cancer3DTMEM221
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTMEM221
MedgenTMEM221
Genetic Testing Registry TMEM221
NextProtA6NGB7 [Medical]
GENETestsTMEM221
Target ValidationTMEM221
Huge Navigator TMEM221 [HugePedia]
ClinGenTMEM221
Clinical trials, drugs, therapy
MyCancerGenomeTMEM221
Protein Interactions : CTDTMEM221
Pharm GKB GenePA162406588
PharosA6NGB7
Clinical trialTMEM221
Miscellaneous
canSAR (ICR)TMEM221
HarmonizomeTMEM221
DataMed IndexTMEM221
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTMEM221
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 16:26:02 CEST 2021

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.