Atlas of Genetics and Cytogenetics in Oncology and Haematology


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TMEM221 (transmembrane protein 221)

Identity

Other alias-
HGNC (Hugo) TMEM221
LocusID (NCBI) 100130519
Atlas_Id 74888
Location 19p13.11  [Link to chromosome band 19p13]
Location_base_pair Starts at 17435509 and ends at 17448567 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM221   21943
Cards
Entrez_Gene (NCBI)TMEM221  100130519  transmembrane protein 221
Aliases
GeneCards (Weizmann)TMEM221
Ensembl hg19 (Hinxton)ENSG00000188051 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000188051 [Gene_View]  chr19:17435509-17448567 [Contig_View]  TMEM221 [Vega]
ICGC DataPortalENSG00000188051
TCGA cBioPortalTMEM221
AceView (NCBI)TMEM221
Genatlas (Paris)TMEM221
WikiGenes100130519
SOURCE (Princeton)TMEM221
Genetics Home Reference (NIH)TMEM221
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM221  -     chr19:17435509-17448567 -  19p13.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM221  -     19p13.11   [Description]    (hg19-Feb_2009)
EnsemblTMEM221 - 19p13.11 [CytoView hg19]  TMEM221 - 19p13.11 [CytoView hg38]
Mapping of homologs : NCBITMEM221 [Mapview hg19]  TMEM221 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC039402 BY797043
RefSeq transcript (Entrez)NM_001190844
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMEM221
Cluster EST : UnigeneHs.436603 [ NCBI ]
CGAP (NCI)Hs.436603
Alternative Splicing GalleryENSG00000188051
Gene ExpressionTMEM221 [ NCBI-GEO ]   TMEM221 [ EBI - ARRAY_EXPRESS ]   TMEM221 [ SEEK ]   TMEM221 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM221 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100130519
GTEX Portal (Tissue expression)TMEM221
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NGB7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NGB7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NGB7
Splice isoforms : SwissVarA6NGB7
PhosPhoSitePlusA6NGB7
Domains : Interpro (EBI)Jiraiya   
Domain families : Pfam (Sanger)Jiraiya (PF15038)   
Domain families : Pfam (NCBI)pfam15038   
Conserved Domain (NCBI)TMEM221
DMDM Disease mutations100130519
Blocks (Seattle)TMEM221
SuperfamilyA6NGB7
Human Protein AtlasENSG00000188051
Peptide AtlasA6NGB7
IPIIPI00888997   
Protein Interaction databases
DIP (DOE-UCLA)A6NGB7
IntAct (EBI)A6NGB7
FunCoupENSG00000188051
BioGRIDTMEM221
STRING (EMBL)TMEM221
ZODIACTMEM221
Ontologies - Pathways
QuickGOA6NGB7
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkTMEM221
Atlas of Cancer Signalling NetworkTMEM221
Wikipedia pathwaysTMEM221
Orthology - Evolution
OrthoDB100130519
GeneTree (enSembl)ENSG00000188051
Phylogenetic Trees/Animal Genes : TreeFamTMEM221
HOVERGENA6NGB7
HOGENOMA6NGB7
Homologs : HomoloGeneTMEM221
Homology/Alignments : Family Browser (UCSC)TMEM221
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM221 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM221
dbVarTMEM221
ClinVarTMEM221
1000_GenomesTMEM221 
Exome Variant ServerTMEM221
ExAC (Exome Aggregation Consortium)TMEM221 (select the gene name)
Genetic variants : HAPMAP100130519
Genomic Variants (DGV)TMEM221 [DGVbeta]
DECIPHERTMEM221 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM221 
Mutations
ICGC Data PortalTMEM221 
TCGA Data PortalTMEM221 
Broad Tumor PortalTMEM221
OASIS PortalTMEM221 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM221  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM221
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM221
DgiDB (Drug Gene Interaction Database)TMEM221
DoCM (Curated mutations)TMEM221 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM221 (select a term)
intoGenTMEM221
Cancer3DTMEM221(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTMEM221
Genetic Testing Registry TMEM221
NextProtA6NGB7 [Medical]
TSGene100130519
GENETestsTMEM221
Target ValidationTMEM221
Huge Navigator TMEM221 [HugePedia]
snp3D : Map Gene to Disease100130519
BioCentury BCIQTMEM221
ClinGenTMEM221
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100130519
Chemical/Pharm GKB GenePA162406588
Clinical trialTMEM221
Miscellaneous
canSAR (ICR)TMEM221 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM221
EVEXTMEM221
GoPubMedTMEM221
iHOPTMEM221
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:41:52 CEST 2017

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