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TMEM222 (transmembrane protein 222)

Identity

Alias_namesC1orf160
chromosome 1 open reading frame 160
Alias_symbol (synonym)DKFZP564D0478
Other alias
HGNC (Hugo) TMEM222
LocusID (NCBI) 84065
Atlas_Id 74889
Location 1p36.11  [Link to chromosome band 1p36]
Location_base_pair Starts at 27322145 and ends at 27336400 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ANKRD46 (8q22.2) / TMEM222 (1p36.11)CSMD2 (1p35.1) / TMEM222 (1p36.11)STX12 (1p35.3) / TMEM222 (1p36.11)
TMEM222 (1p36.11) / TMEM97 (17q11.2)ANKRD46 TMEM222STX12 TMEM222

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM222   25363
Cards
Entrez_Gene (NCBI)TMEM222  84065  transmembrane protein 222
AliasesC1orf160
GeneCards (Weizmann)TMEM222
Ensembl hg19 (Hinxton)ENSG00000186501 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000186501 [Gene_View]  chr1:27322145-27336400 [Contig_View]  TMEM222 [Vega]
ICGC DataPortalENSG00000186501
TCGA cBioPortalTMEM222
AceView (NCBI)TMEM222
Genatlas (Paris)TMEM222
WikiGenes84065
SOURCE (Princeton)TMEM222
Genetics Home Reference (NIH)TMEM222
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM222  -     chr1:27322145-27336400 +  1p36.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM222  -     1p36.11   [Description]    (hg19-Feb_2009)
EnsemblTMEM222 - 1p36.11 [CytoView hg19]  TMEM222 - 1p36.11 [CytoView hg38]
Mapping of homologs : NCBITMEM222 [Mapview hg19]  TMEM222 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF251699 AK095889 AK123218 AK222642 AK303821
RefSeq transcript (Entrez)NM_032125
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMEM222
Cluster EST : UnigeneHs.469171 [ NCBI ]
CGAP (NCI)Hs.469171
Alternative Splicing GalleryENSG00000186501
Gene ExpressionTMEM222 [ NCBI-GEO ]   TMEM222 [ EBI - ARRAY_EXPRESS ]   TMEM222 [ SEEK ]   TMEM222 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM222 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84065
GTEX Portal (Tissue expression)TMEM222
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H0R3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H0R3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H0R3
Splice isoforms : SwissVarQ9H0R3
PhosPhoSitePlusQ9H0R3
Domains : Interpro (EBI)DUF778   
Domain families : Pfam (Sanger)DUF778 (PF05608)   
Domain families : Pfam (NCBI)pfam05608   
Conserved Domain (NCBI)TMEM222
DMDM Disease mutations84065
Blocks (Seattle)TMEM222
SuperfamilyQ9H0R3
Human Protein AtlasENSG00000186501
Peptide AtlasQ9H0R3
HPRD13167
IPIIPI00030236   IPI00940963   IPI00513701   IPI00647017   IPI00947271   IPI00946294   IPI00945831   IPI00945647   
Protein Interaction databases
DIP (DOE-UCLA)Q9H0R3
IntAct (EBI)Q9H0R3
FunCoupENSG00000186501
BioGRIDTMEM222
STRING (EMBL)TMEM222
ZODIACTMEM222
Ontologies - Pathways
QuickGOQ9H0R3
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkTMEM222
Atlas of Cancer Signalling NetworkTMEM222
Wikipedia pathwaysTMEM222
Orthology - Evolution
OrthoDB84065
GeneTree (enSembl)ENSG00000186501
Phylogenetic Trees/Animal Genes : TreeFamTMEM222
HOVERGENQ9H0R3
HOGENOMQ9H0R3
Homologs : HomoloGeneTMEM222
Homology/Alignments : Family Browser (UCSC)TMEM222
Gene fusions - Rearrangements
Fusion: TCGAANKRD46 TMEM222
Fusion: TCGASTX12 TMEM222
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM222 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM222
dbVarTMEM222
ClinVarTMEM222
1000_GenomesTMEM222 
Exome Variant ServerTMEM222
ExAC (Exome Aggregation Consortium)TMEM222 (select the gene name)
Genetic variants : HAPMAP84065
Genomic Variants (DGV)TMEM222 [DGVbeta]
DECIPHERTMEM222 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM222 
Mutations
ICGC Data PortalTMEM222 
TCGA Data PortalTMEM222 
Broad Tumor PortalTMEM222
OASIS PortalTMEM222 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM222  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM222
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM222
DgiDB (Drug Gene Interaction Database)TMEM222
DoCM (Curated mutations)TMEM222 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM222 (select a term)
intoGenTMEM222
Cancer3DTMEM222(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTMEM222
Genetic Testing Registry TMEM222
NextProtQ9H0R3 [Medical]
TSGene84065
GENETestsTMEM222
Target ValidationTMEM222
Huge Navigator TMEM222 [HugePedia]
snp3D : Map Gene to Disease84065
BioCentury BCIQTMEM222
ClinGenTMEM222
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84065
Chemical/Pharm GKB GenePA162406598
Clinical trialTMEM222
Miscellaneous
canSAR (ICR)TMEM222 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM222
EVEXTMEM222
GoPubMedTMEM222
iHOPTMEM222
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:41:52 CEST 2017

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