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TMEM223 (transmembrane protein 223)

Identity

Alias (NCBI)-
HGNC (Hugo) TMEM223
HGNC Alias symbMGC3196
LocusID (NCBI) 79064
Atlas_Id 74890
Location 11q12.3  [Link to chromosome band 11q12]
Location_base_pair Starts at 62789971 and ends at 62792006 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TMEM223 (11q12.3) / EIF4A1 (17p13.1)TMEM223 (11q12.3) / PDHA1 (Xp22.12)TMEM223 (11q12.3) / STX5 (11q12.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TMEM223   28464
Cards
Entrez_Gene (NCBI)TMEM223    transmembrane protein 223
Aliases
GeneCards (Weizmann)TMEM223
Ensembl hg19 (Hinxton)ENSG00000168569 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000168569 [Gene_View]  ENSG00000168569 [Sequence]  chr11:62789971-62792006 [Contig_View]  TMEM223 [Vega]
ICGC DataPortalENSG00000168569
TCGA cBioPortalTMEM223
AceView (NCBI)TMEM223
Genatlas (Paris)TMEM223
SOURCE (Princeton)TMEM223
Genetics Home Reference (NIH)TMEM223
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM223  -     chr11:62789971-62792006 -  11q12.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM223  -     11q12.3   [Description]    (hg19-Feb_2009)
GoldenPathTMEM223 - 11q12.3 [CytoView hg19]  TMEM223 - 11q12.3 [CytoView hg38]
ImmunoBaseENSG00000168569
Genome Data Viewer NCBITMEM223 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)BC008643 BC020914 BC035565 BC042801 BC071957
RefSeq transcript (Entrez)NM_001080501
Consensus coding sequences : CCDS (NCBI)TMEM223
Gene ExpressionTMEM223 [ NCBI-GEO ]   TMEM223 [ EBI - ARRAY_EXPRESS ]   TMEM223 [ SEEK ]   TMEM223 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM223 [ Firebrowse - Broad ]
GenevisibleExpression of TMEM223 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79064
GTEX Portal (Tissue expression)TMEM223
Human Protein AtlasENSG00000168569-TMEM223 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA0PJW6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA0PJW6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA0PJW6
PhosPhoSitePlusA0PJW6
Domains : Interpro (EBI)Tmem223   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TMEM223
SuperfamilyA0PJW6
AlphaFold pdb e-kbA0PJW6   
Human Protein Atlas [tissue]ENSG00000168569-TMEM223 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)A0PJW6
IntAct (EBI)A0PJW6
BioGRIDTMEM223
STRING (EMBL)TMEM223
ZODIACTMEM223
Ontologies - Pathways
QuickGOA0PJW6
Ontology : AmiGOnervous system development  integral component of membrane  
Ontology : EGO-EBInervous system development  integral component of membrane  
NDEx NetworkTMEM223
Atlas of Cancer Signalling NetworkTMEM223
Wikipedia pathwaysTMEM223
Orthology - Evolution
OrthoDB79064
GeneTree (enSembl)ENSG00000168569
Phylogenetic Trees/Animal Genes : TreeFamTMEM223
Homologs : HomoloGeneTMEM223
Homology/Alignments : Family Browser (UCSC)TMEM223
Gene fusions - Rearrangements
Fusion : QuiverTMEM223
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM223 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM223
dbVarTMEM223
ClinVarTMEM223
MonarchTMEM223
1000_GenomesTMEM223 
Exome Variant ServerTMEM223
GNOMAD BrowserENSG00000168569
Varsome BrowserTMEM223
ACMGTMEM223 variants
VarityA0PJW6
Genomic Variants (DGV)TMEM223 [DGVbeta]
DECIPHERTMEM223 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM223 
Mutations
ICGC Data PortalTMEM223 
TCGA Data PortalTMEM223 
Broad Tumor PortalTMEM223
OASIS PortalTMEM223 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM223  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTMEM223
Mutations and Diseases : HGMDTMEM223
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTMEM223
DgiDB (Drug Gene Interaction Database)TMEM223
DoCM (Curated mutations)TMEM223
CIViC (Clinical Interpretations of Variants in Cancer)TMEM223
Cancer3DTMEM223
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTMEM223
MedgenTMEM223
Genetic Testing Registry TMEM223
NextProtA0PJW6 [Medical]
GENETestsTMEM223
Target ValidationTMEM223
Huge Navigator TMEM223 [HugePedia]
ClinGenTMEM223
Clinical trials, drugs, therapy
MyCancerGenomeTMEM223
Protein Interactions : CTDTMEM223
Pharm GKB GenePA164726538
PharosA0PJW6
Clinical trialTMEM223
Miscellaneous
canSAR (ICR)TMEM223
HarmonizomeTMEM223
DataMed IndexTMEM223
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTMEM223
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:26:02 CEST 2021

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