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TMEM223 (transmembrane protein 223)

Identity

Alias_symbol (synonym)MGC3196
Other alias-
HGNC (Hugo) TMEM223
LocusID (NCBI) 79064
Atlas_Id 74890
Location 11q12.3  [Link to chromosome band 11q12]
Location_base_pair Starts at 62557787 and ends at 62559486 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
TMEM223 (11q12.3) / EIF4A1 (17p13.1)TMEM223 (11q12.3) / PDHA1 (Xp22.12)TMEM223 (11q12.3) / STX5 (11q12.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM223   28464
Cards
Entrez_Gene (NCBI)TMEM223  79064  transmembrane protein 223
Aliases
GeneCards (Weizmann)TMEM223
Ensembl hg19 (Hinxton) [Gene_View]  chr11:62557787-62559486 [Contig_View]  TMEM223 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr11:62557787-62559486 [Contig_View]  TMEM223 [Vega]
TCGA cBioPortalTMEM223
AceView (NCBI)TMEM223
Genatlas (Paris)TMEM223
WikiGenes79064
SOURCE (Princeton)TMEM223
Genetics Home Reference (NIH)TMEM223
Genomic and cartography
GoldenPath hg19 (UCSC)TMEM223  -     chr11:62557787-62559486 -  11q12.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TMEM223  -     11q12.3   [Description]    (hg38-Dec_2013)
EnsemblTMEM223 - 11q12.3 [CytoView hg19]  TMEM223 - 11q12.3 [CytoView hg38]
Mapping of homologs : NCBITMEM223 [Mapview hg19]  TMEM223 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC008643 BC020914 BC035565 BC042801 BC071957
RefSeq transcript (Entrez)NM_001080501
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_167190 NW_004929380
Consensus coding sequences : CCDS (NCBI)TMEM223
Cluster EST : UnigeneHs.530463 [ NCBI ]
CGAP (NCI)Hs.530463
Gene ExpressionTMEM223 [ NCBI-GEO ]   TMEM223 [ EBI - ARRAY_EXPRESS ]   TMEM223 [ SEEK ]   TMEM223 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM223 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79064
GTEX Portal (Tissue expression)TMEM223
Protein : pattern, domain, 3D structure
UniProt/SwissProtA0PJW6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA0PJW6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA0PJW6
Splice isoforms : SwissVarA0PJW6
PhosPhoSitePlusA0PJW6
Domains : Interpro (EBI)Tmem223   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TMEM223
DMDM Disease mutations79064
Blocks (Seattle)TMEM223
SuperfamilyA0PJW6
Peptide AtlasA0PJW6
IPIIPI00456888   IPI00982202   IPI00980148   
Protein Interaction databases
DIP (DOE-UCLA)A0PJW6
IntAct (EBI)A0PJW6
BioGRIDTMEM223
STRING (EMBL)TMEM223
ZODIACTMEM223
Ontologies - Pathways
QuickGOA0PJW6
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkTMEM223
Atlas of Cancer Signalling NetworkTMEM223
Wikipedia pathwaysTMEM223
Orthology - Evolution
OrthoDB79064
Phylogenetic Trees/Animal Genes : TreeFamTMEM223
HOVERGENA0PJW6
HOGENOMA0PJW6
Homologs : HomoloGeneTMEM223
Homology/Alignments : Family Browser (UCSC)TMEM223
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM223 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM223
dbVarTMEM223
ClinVarTMEM223
1000_GenomesTMEM223 
Exome Variant ServerTMEM223
ExAC (Exome Aggregation Consortium)TMEM223 (select the gene name)
Genetic variants : HAPMAP79064
Genomic Variants (DGV)TMEM223 [DGVbeta]
DECIPHER (Syndromes)11:62557787-62559486  
CONAN: Copy Number AnalysisTMEM223 
Mutations
ICGC Data PortalTMEM223 
TCGA Data PortalTMEM223 
Broad Tumor PortalTMEM223
OASIS PortalTMEM223 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM223  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM223
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM223
DgiDB (Drug Gene Interaction Database)TMEM223
DoCM (Curated mutations)TMEM223 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM223 (select a term)
intoGenTMEM223
Cancer3DTMEM223(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTMEM223
Genetic Testing Registry TMEM223
NextProtA0PJW6 [Medical]
TSGene79064
GENETestsTMEM223
Huge Navigator TMEM223 [HugePedia]
snp3D : Map Gene to Disease79064
BioCentury BCIQTMEM223
ClinGenTMEM223
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79064
Chemical/Pharm GKB GenePA164726538
Clinical trialTMEM223
Miscellaneous
canSAR (ICR)TMEM223 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM223
EVEXTMEM223
GoPubMedTMEM223
iHOPTMEM223
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:48:45 CET 2017

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