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TMEM225 (transmembrane protein 225)

Identity

Alias_symbol (synonym)PMP22CD
PPP1R154
Other aliasSPATA47
HGNC (Hugo) TMEM225
LocusID (NCBI) 338661
Atlas_Id 74891
Location 11q24.1  [Link to chromosome band 11q24]
Location_base_pair Starts at 123882926 and ends at 123885642 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM225   32390
Cards
Entrez_Gene (NCBI)TMEM225  338661  transmembrane protein 225
AliasesPMP22CD; PPP1R154; SPATA47
GeneCards (Weizmann)TMEM225
Ensembl hg19 (Hinxton)ENSG00000204300 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204300 [Gene_View]  chr11:123882926-123885642 [Contig_View]  TMEM225 [Vega]
ICGC DataPortalENSG00000204300
TCGA cBioPortalTMEM225
AceView (NCBI)TMEM225
Genatlas (Paris)TMEM225
WikiGenes338661
SOURCE (Princeton)TMEM225
Genetics Home Reference (NIH)TMEM225
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM225  -     chr11:123882926-123885642 -  11q24.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM225  -     11q24.1   [Description]    (hg19-Feb_2009)
EnsemblTMEM225 - 11q24.1 [CytoView hg19]  TMEM225 - 11q24.1 [CytoView hg38]
Mapping of homologs : NCBITMEM225 [Mapview hg19]  TMEM225 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA437068 AY634366 BX091037
RefSeq transcript (Entrez)NM_001013743
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMEM225
Cluster EST : UnigeneHs.98377 [ NCBI ]
CGAP (NCI)Hs.98377
Alternative Splicing GalleryENSG00000204300
Gene ExpressionTMEM225 [ NCBI-GEO ]   TMEM225 [ EBI - ARRAY_EXPRESS ]   TMEM225 [ SEEK ]   TMEM225 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM225 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)338661
GTEX Portal (Tissue expression)TMEM225
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6GV28   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6GV28  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6GV28
Splice isoforms : SwissVarQ6GV28
PhosPhoSitePlusQ6GV28
Domains : Interpro (EBI)TMEM225   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TMEM225
DMDM Disease mutations338661
Blocks (Seattle)TMEM225
SuperfamilyQ6GV28
Human Protein AtlasENSG00000204300
Peptide AtlasQ6GV28
HPRD18492
IPIIPI00433310   IPI00976301   
Protein Interaction databases
DIP (DOE-UCLA)Q6GV28
IntAct (EBI)Q6GV28
FunCoupENSG00000204300
BioGRIDTMEM225
STRING (EMBL)TMEM225
ZODIACTMEM225
Ontologies - Pathways
QuickGOQ6GV28
Ontology : AmiGOacrosomal membrane  negative regulation of phosphatase activity  integral component of membrane  
Ontology : EGO-EBIacrosomal membrane  negative regulation of phosphatase activity  integral component of membrane  
NDEx NetworkTMEM225
Atlas of Cancer Signalling NetworkTMEM225
Wikipedia pathwaysTMEM225
Orthology - Evolution
OrthoDB338661
GeneTree (enSembl)ENSG00000204300
Phylogenetic Trees/Animal Genes : TreeFamTMEM225
HOVERGENQ6GV28
HOGENOMQ6GV28
Homologs : HomoloGeneTMEM225
Homology/Alignments : Family Browser (UCSC)TMEM225
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM225 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM225
dbVarTMEM225
ClinVarTMEM225
1000_GenomesTMEM225 
Exome Variant ServerTMEM225
ExAC (Exome Aggregation Consortium)TMEM225 (select the gene name)
Genetic variants : HAPMAP338661
Genomic Variants (DGV)TMEM225 [DGVbeta]
DECIPHERTMEM225 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM225 
Mutations
ICGC Data PortalTMEM225 
TCGA Data PortalTMEM225 
Broad Tumor PortalTMEM225
OASIS PortalTMEM225 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM225  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM225
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM225
DgiDB (Drug Gene Interaction Database)TMEM225
DoCM (Curated mutations)TMEM225 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM225 (select a term)
intoGenTMEM225
Cancer3DTMEM225(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTMEM225
Genetic Testing Registry TMEM225
NextProtQ6GV28 [Medical]
TSGene338661
GENETestsTMEM225
Target ValidationTMEM225
Huge Navigator TMEM225 [HugePedia]
snp3D : Map Gene to Disease338661
BioCentury BCIQTMEM225
ClinGenTMEM225
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD338661
Chemical/Pharm GKB GenePA164726548
Clinical trialTMEM225
Miscellaneous
canSAR (ICR)TMEM225 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM225
EVEXTMEM225
GoPubMedTMEM225
iHOPTMEM225
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:46:09 CEST 2017

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