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TMEM225B (transmembrane protein 225B)

Identity

Other aliasGS1-259H13.2
HGNC (Hugo) TMEM225B
LocusID (NCBI) 100289187
Atlas_Id 79193
Location 7q22.1  [Link to chromosome band 7q22]
Location_base_pair Starts at 99598066 and ends at 99611045 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM225B   53075
Cards
Entrez_Gene (NCBI)TMEM225B  100289187  transmembrane protein 225B
AliasesGS1-259H13.2
GeneCards (Weizmann)TMEM225B
Ensembl hg19 (Hinxton)ENSG00000244219 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000244219 [Gene_View]  ENSG00000244219 [Sequence]  chr7:99598066-99611045 [Contig_View]  TMEM225B [Vega]
ICGC DataPortalENSG00000244219
TCGA cBioPortalTMEM225B
AceView (NCBI)TMEM225B
Genatlas (Paris)TMEM225B
WikiGenes100289187
SOURCE (Princeton)TMEM225B
Genetics Home Reference (NIH)TMEM225B
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM225B  -     chr7:99598066-99611045 +  7q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM225B  -     7q22.1   [Description]    (hg19-Feb_2009)
GoldenPathTMEM225B - 7q22.1 [CytoView hg19]  TMEM225B - 7q22.1 [CytoView hg38]
ImmunoBaseENSG00000244219
Mapping of homologs : NCBITMEM225B [Mapview hg19]  TMEM225B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA781117 AI028251 BG459722 BG461486 BI559535
RefSeq transcript (Entrez)NM_001195541 NM_001195542 NM_001195543
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMEM225B
Cluster EST : UnigeneHs.729333 [ NCBI ]
CGAP (NCI)Hs.729333
Alternative Splicing GalleryENSG00000244219
Gene ExpressionTMEM225B [ NCBI-GEO ]   TMEM225B [ EBI - ARRAY_EXPRESS ]   TMEM225B [ SEEK ]   TMEM225B [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM225B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100289187
GTEX Portal (Tissue expression)TMEM225B
Human Protein AtlasENSG00000244219-TMEM225B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0DP42   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0DP42  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0DP42
Splice isoforms : SwissVarP0DP42
PhosPhoSitePlusP0DP42
Domains : Interpro (EBI)TMEM225   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TMEM225B
DMDM Disease mutations100289187
Blocks (Seattle)TMEM225B
SuperfamilyP0DP42
Human Protein Atlas [tissue]ENSG00000244219-TMEM225B [tissue]
Peptide AtlasP0DP42
IPIIPI00976864   
Protein Interaction databases
DIP (DOE-UCLA)P0DP42
IntAct (EBI)P0DP42
FunCoupENSG00000244219
BioGRIDTMEM225B
STRING (EMBL)TMEM225B
ZODIACTMEM225B
Ontologies - Pathways
QuickGOP0DP42
Ontology : AmiGOnegative regulation of phosphatase activity  integral component of membrane  
Ontology : EGO-EBInegative regulation of phosphatase activity  integral component of membrane  
NDEx NetworkTMEM225B
Atlas of Cancer Signalling NetworkTMEM225B
Wikipedia pathwaysTMEM225B
Orthology - Evolution
OrthoDB100289187
GeneTree (enSembl)ENSG00000244219
Phylogenetic Trees/Animal Genes : TreeFamTMEM225B
HOGENOMP0DP42
Homologs : HomoloGeneTMEM225B
Homology/Alignments : Family Browser (UCSC)TMEM225B
Gene fusions - Rearrangements
Fusion : QuiverTMEM225B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM225B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM225B
dbVarTMEM225B
ClinVarTMEM225B
1000_GenomesTMEM225B 
Exome Variant ServerTMEM225B
ExAC (Exome Aggregation Consortium)ENSG00000244219
GNOMAD BrowserENSG00000244219
Varsome BrowserTMEM225B
Genetic variants : HAPMAP100289187
Genomic Variants (DGV)TMEM225B [DGVbeta]
DECIPHERTMEM225B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM225B 
Mutations
ICGC Data PortalTMEM225B 
TCGA Data PortalTMEM225B 
Broad Tumor PortalTMEM225B
OASIS PortalTMEM225B [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTMEM225B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM225B
DgiDB (Drug Gene Interaction Database)TMEM225B
DoCM (Curated mutations)TMEM225B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM225B (select a term)
intoGenTMEM225B
Cancer3DTMEM225B(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTMEM225B
MedgenTMEM225B
Genetic Testing Registry TMEM225B
NextProtP0DP42 [Medical]
TSGene100289187
GENETestsTMEM225B
Target ValidationTMEM225B
Huge Navigator TMEM225B [HugePedia]
snp3D : Map Gene to Disease100289187
BioCentury BCIQTMEM225B
ClinGenTMEM225B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100289187
Clinical trialTMEM225B
Miscellaneous
canSAR (ICR)TMEM225B (select the gene name)
DataMed IndexTMEM225B
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM225B
EVEXTMEM225B
GoPubMedTMEM225B
iHOPTMEM225B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Sep 3 16:10:30 CEST 2019

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