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TMEM229A (transmembrane protein 229A)

Identity

Other alias-
HGNC (Hugo) TMEM229A
LocusID (NCBI) 730130
Atlas_Id 74892
Location 7q31.32  [Link to chromosome band 7q31]
Location_base_pair Starts at 124030916 and ends at 124033469 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM229A   37279
Cards
Entrez_Gene (NCBI)TMEM229A  730130  transmembrane protein 229A
Aliases
GeneCards (Weizmann)TMEM229A
Ensembl hg19 (Hinxton)ENSG00000234224 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000234224 [Gene_View]  chr7:124030916-124033469 [Contig_View]  TMEM229A [Vega]
ICGC DataPortalENSG00000234224
TCGA cBioPortalTMEM229A
AceView (NCBI)TMEM229A
Genatlas (Paris)TMEM229A
WikiGenes730130
SOURCE (Princeton)TMEM229A
Genetics Home Reference (NIH)TMEM229A
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM229A  -     chr7:124030916-124033469 -  7q31.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM229A  -     7q31.32   [Description]    (hg19-Feb_2009)
EnsemblTMEM229A - 7q31.32 [CytoView hg19]  TMEM229A - 7q31.32 [CytoView hg38]
Mapping of homologs : NCBITMEM229A [Mapview hg19]  TMEM229A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA065302 BC157828 BC171809 BU741231
RefSeq transcript (Entrez)NM_001136002
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMEM229A
Cluster EST : UnigeneHs.450249 [ NCBI ]
CGAP (NCI)Hs.450249
Alternative Splicing GalleryENSG00000234224
Gene ExpressionTMEM229A [ NCBI-GEO ]   TMEM229A [ EBI - ARRAY_EXPRESS ]   TMEM229A [ SEEK ]   TMEM229A [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM229A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)730130
GTEX Portal (Tissue expression)TMEM229A
Protein : pattern, domain, 3D structure
UniProt/SwissProtB2RXF0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtB2RXF0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProB2RXF0
Splice isoforms : SwissVarB2RXF0
PhosPhoSitePlusB2RXF0
Domains : Interpro (EBI)IV_Tat   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TMEM229A
DMDM Disease mutations730130
Blocks (Seattle)TMEM229A
SuperfamilyB2RXF0
Human Protein AtlasENSG00000234224
Peptide AtlasB2RXF0
IPIIPI00927697   
Protein Interaction databases
DIP (DOE-UCLA)B2RXF0
IntAct (EBI)B2RXF0
FunCoupENSG00000234224
BioGRIDTMEM229A
STRING (EMBL)TMEM229A
ZODIACTMEM229A
Ontologies - Pathways
QuickGOB2RXF0
Ontology : AmiGORNA binding transcription factor activity  integral component of membrane  host cell nucleus  positive regulation of viral transcription  
Ontology : EGO-EBIRNA binding transcription factor activity  integral component of membrane  host cell nucleus  positive regulation of viral transcription  
NDEx NetworkTMEM229A
Atlas of Cancer Signalling NetworkTMEM229A
Wikipedia pathwaysTMEM229A
Orthology - Evolution
OrthoDB730130
GeneTree (enSembl)ENSG00000234224
Phylogenetic Trees/Animal Genes : TreeFamTMEM229A
HOVERGENB2RXF0
HOGENOMB2RXF0
Homologs : HomoloGeneTMEM229A
Homology/Alignments : Family Browser (UCSC)TMEM229A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM229A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM229A
dbVarTMEM229A
ClinVarTMEM229A
1000_GenomesTMEM229A 
Exome Variant ServerTMEM229A
ExAC (Exome Aggregation Consortium)TMEM229A (select the gene name)
Genetic variants : HAPMAP730130
Genomic Variants (DGV)TMEM229A [DGVbeta]
DECIPHERTMEM229A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM229A 
Mutations
ICGC Data PortalTMEM229A 
TCGA Data PortalTMEM229A 
Broad Tumor PortalTMEM229A
OASIS PortalTMEM229A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM229A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM229A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM229A
DgiDB (Drug Gene Interaction Database)TMEM229A
DoCM (Curated mutations)TMEM229A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM229A (select a term)
intoGenTMEM229A
Cancer3DTMEM229A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTMEM229A
Genetic Testing Registry TMEM229A
NextProtB2RXF0 [Medical]
TSGene730130
GENETestsTMEM229A
Target ValidationTMEM229A
Huge Navigator TMEM229A [HugePedia]
snp3D : Map Gene to Disease730130
BioCentury BCIQTMEM229A
ClinGenTMEM229A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD730130
Chemical/Pharm GKB GenePA165618420
Clinical trialTMEM229A
Miscellaneous
canSAR (ICR)TMEM229A (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM229A
EVEXTMEM229A
GoPubMedTMEM229A
iHOPTMEM229A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:46:10 CEST 2017

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