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TMEM229B (transmembrane protein 229B)

Identity

Alias_namesC14orf83
chromosome 14 open reading frame 83
Alias_symbol (synonym)FLJ33387
Other alias
HGNC (Hugo) TMEM229B
LocusID (NCBI) 161145
Atlas_Id 74893
Location 14q24.1  [Link to chromosome band 14q24]
Location_base_pair Starts at 67470266 and ends at 67488732 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
HUWE1 (Xp11.22) / TMEM229B (14q24.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM229B   20130
Cards
Entrez_Gene (NCBI)TMEM229B  161145  transmembrane protein 229B
AliasesC14orf83
GeneCards (Weizmann)TMEM229B
Ensembl hg19 (Hinxton)ENSG00000198133 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198133 [Gene_View]  chr14:67470266-67488732 [Contig_View]  TMEM229B [Vega]
ICGC DataPortalENSG00000198133
TCGA cBioPortalTMEM229B
AceView (NCBI)TMEM229B
Genatlas (Paris)TMEM229B
WikiGenes161145
SOURCE (Princeton)TMEM229B
Genetics Home Reference (NIH)TMEM229B
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM229B  -     chr14:67470266-67488732 -  14q24.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM229B  -     14q24.1   [Description]    (hg19-Feb_2009)
EnsemblTMEM229B - 14q24.1 [CytoView hg19]  TMEM229B - 14q24.1 [CytoView hg38]
Mapping of homologs : NCBITMEM229B [Mapview hg19]  TMEM229B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK056646 AK074690 AK090706 BC104940 BC104942
RefSeq transcript (Entrez)NM_001348541 NM_001348542 NM_001348543 NM_001348544 NM_001348546 NM_001348547 NM_001348548 NM_001348549 NM_182526
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMEM229B
Cluster EST : UnigeneHs.509707 [ NCBI ]
CGAP (NCI)Hs.509707
Alternative Splicing GalleryENSG00000198133
Gene ExpressionTMEM229B [ NCBI-GEO ]   TMEM229B [ EBI - ARRAY_EXPRESS ]   TMEM229B [ SEEK ]   TMEM229B [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM229B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)161145
GTEX Portal (Tissue expression)TMEM229B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NBD8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NBD8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NBD8
Splice isoforms : SwissVarQ8NBD8
PhosPhoSitePlusQ8NBD8
Domains : Interpro (EBI)CmpB_TMEM229   
Domain families : Pfam (Sanger)ABC_trans_CmpB (PF06541)   
Domain families : Pfam (NCBI)pfam06541   
Conserved Domain (NCBI)TMEM229B
DMDM Disease mutations161145
Blocks (Seattle)TMEM229B
SuperfamilyQ8NBD8
Human Protein AtlasENSG00000198133
Peptide AtlasQ8NBD8
HPRD08157
IPIIPI00184162   IPI01024710   IPI01026555   IPI01026190   IPI01025057   
Protein Interaction databases
DIP (DOE-UCLA)Q8NBD8
IntAct (EBI)Q8NBD8
FunCoupENSG00000198133
BioGRIDTMEM229B
STRING (EMBL)TMEM229B
ZODIACTMEM229B
Ontologies - Pathways
QuickGOQ8NBD8
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkTMEM229B
Atlas of Cancer Signalling NetworkTMEM229B
Wikipedia pathwaysTMEM229B
Orthology - Evolution
OrthoDB161145
GeneTree (enSembl)ENSG00000198133
Phylogenetic Trees/Animal Genes : TreeFamTMEM229B
HOVERGENQ8NBD8
HOGENOMQ8NBD8
Homologs : HomoloGeneTMEM229B
Homology/Alignments : Family Browser (UCSC)TMEM229B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM229B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM229B
dbVarTMEM229B
ClinVarTMEM229B
1000_GenomesTMEM229B 
Exome Variant ServerTMEM229B
ExAC (Exome Aggregation Consortium)TMEM229B (select the gene name)
Genetic variants : HAPMAP161145
Genomic Variants (DGV)TMEM229B [DGVbeta]
DECIPHERTMEM229B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM229B 
Mutations
ICGC Data PortalTMEM229B 
TCGA Data PortalTMEM229B 
Broad Tumor PortalTMEM229B
OASIS PortalTMEM229B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM229B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM229B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM229B
DgiDB (Drug Gene Interaction Database)TMEM229B
DoCM (Curated mutations)TMEM229B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM229B (select a term)
intoGenTMEM229B
Cancer3DTMEM229B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTMEM229B
Genetic Testing Registry TMEM229B
NextProtQ8NBD8 [Medical]
TSGene161145
GENETestsTMEM229B
Target ValidationTMEM229B
Huge Navigator TMEM229B [HugePedia]
snp3D : Map Gene to Disease161145
BioCentury BCIQTMEM229B
ClinGenTMEM229B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD161145
Chemical/Pharm GKB GenePA165479330
Clinical trialTMEM229B
Miscellaneous
canSAR (ICR)TMEM229B (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM229B
EVEXTMEM229B
GoPubMedTMEM229B
iHOPTMEM229B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:46:10 CEST 2017

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