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TMEM231 (transmembrane protein 231)

Identity

Alias_symbol (synonym)FLJ22167
ALYE870
PRO1886
JBTS20
MKS11
Other alias
HGNC (Hugo) TMEM231
LocusID (NCBI) 79583
Atlas_Id 74895
Location 16q23.1  [Link to chromosome band 16q23]
Location_base_pair Starts at 75538117 and ends at 75556286 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CHST5 (16q23.1) / TMEM231 (16q23.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM231   37234
Cards
Entrez_Gene (NCBI)TMEM231  79583  transmembrane protein 231
AliasesALYE870; JBTS20; MKS11; PRO1886
GeneCards (Weizmann)TMEM231
Ensembl hg19 (Hinxton)ENSG00000205084 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000205084 [Gene_View]  chr16:75538117-75556286 [Contig_View]  TMEM231 [Vega]
ICGC DataPortalENSG00000205084
TCGA cBioPortalTMEM231
AceView (NCBI)TMEM231
Genatlas (Paris)TMEM231
WikiGenes79583
SOURCE (Princeton)TMEM231
Genetics Home Reference (NIH)TMEM231
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM231  -     chr16:75538117-75556286 -  16q23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM231  -     16q23.1   [Description]    (hg19-Feb_2009)
EnsemblTMEM231 - 16q23.1 [CytoView hg19]  TMEM231 - 16q23.1 [CytoView hg38]
Mapping of homologs : NCBITMEM231 [Mapview hg19]  TMEM231 [Mapview hg38]
OMIM614949   614970   615397   
Gene and transcription
Genbank (Entrez)AK025820 AK057689 AK096650 AK290483 AK298994
RefSeq transcript (Entrez)NM_001077416 NM_001077418
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMEM231
Cluster EST : UnigeneHs.156784 [ NCBI ]
CGAP (NCI)Hs.156784
Alternative Splicing GalleryENSG00000205084
Gene ExpressionTMEM231 [ NCBI-GEO ]   TMEM231 [ EBI - ARRAY_EXPRESS ]   TMEM231 [ SEEK ]   TMEM231 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM231 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79583
GTEX Portal (Tissue expression)TMEM231
Human Protein AtlasENSG00000205084-TMEM231 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H6L2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H6L2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H6L2
Splice isoforms : SwissVarQ9H6L2
PhosPhoSitePlusQ9H6L2
Domains : Interpro (EBI)TMEM231   
Domain families : Pfam (Sanger)TM231 (PF10149)   
Domain families : Pfam (NCBI)pfam10149   
Conserved Domain (NCBI)TMEM231
DMDM Disease mutations79583
Blocks (Seattle)TMEM231
SuperfamilyQ9H6L2
Human Protein Atlas [tissue]ENSG00000205084-TMEM231 [tissue]
Peptide AtlasQ9H6L2
IPIIPI00556316   IPI00792612   IPI00647147   
Protein Interaction databases
DIP (DOE-UCLA)Q9H6L2
IntAct (EBI)Q9H6L2
FunCoupENSG00000205084
BioGRIDTMEM231
STRING (EMBL)TMEM231
ZODIACTMEM231
Ontologies - Pathways
QuickGOQ9H6L2
Ontology : AmiGOprotein binding  smoothened signaling pathway  integral component of membrane  ciliary transition zone  MKS complex  ciliary membrane  cilium assembly  
Ontology : EGO-EBIprotein binding  smoothened signaling pathway  integral component of membrane  ciliary transition zone  MKS complex  ciliary membrane  cilium assembly  
NDEx NetworkTMEM231
Atlas of Cancer Signalling NetworkTMEM231
Wikipedia pathwaysTMEM231
Orthology - Evolution
OrthoDB79583
GeneTree (enSembl)ENSG00000205084
Phylogenetic Trees/Animal Genes : TreeFamTMEM231
HOVERGENQ9H6L2
HOGENOMQ9H6L2
Homologs : HomoloGeneTMEM231
Homology/Alignments : Family Browser (UCSC)TMEM231
Gene fusions - Rearrangements
Tumor Fusion PortalTMEM231
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM231 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM231
dbVarTMEM231
ClinVarTMEM231
1000_GenomesTMEM231 
Exome Variant ServerTMEM231
ExAC (Exome Aggregation Consortium)ENSG00000205084
GNOMAD BrowserENSG00000205084
Genetic variants : HAPMAP79583
Genomic Variants (DGV)TMEM231 [DGVbeta]
DECIPHERTMEM231 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM231 
Mutations
ICGC Data PortalTMEM231 
TCGA Data PortalTMEM231 
Broad Tumor PortalTMEM231
OASIS PortalTMEM231 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM231  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM231
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM231
DgiDB (Drug Gene Interaction Database)TMEM231
DoCM (Curated mutations)TMEM231 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM231 (select a term)
intoGenTMEM231
Cancer3DTMEM231(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614949    614970    615397   
Orphanet280    519   
DisGeNETTMEM231
MedgenTMEM231
Genetic Testing Registry TMEM231
NextProtQ9H6L2 [Medical]
TSGene79583
GENETestsTMEM231
Target ValidationTMEM231
Huge Navigator TMEM231 [HugePedia]
snp3D : Map Gene to Disease79583
BioCentury BCIQTMEM231
ClinGenTMEM231
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79583
Chemical/Pharm GKB GenePA165450754
Clinical trialTMEM231
Miscellaneous
canSAR (ICR)TMEM231 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM231
EVEXTMEM231
GoPubMedTMEM231
iHOPTMEM231
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:34:33 CET 2017

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