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TMEM232 (transmembrane protein 232)

Identity

Alias_symbol (synonym)FLJ43080
Other alias-
HGNC (Hugo) TMEM232
LocusID (NCBI) 642987
Atlas_Id 74896
Location 5q22.1  [Link to chromosome band 5q22]
Location_base_pair Starts at 110419496 and ends at 110726749 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
COTL1 (16q24.1) / TMEM232 (5q22.1)KIAA2026 (9p24.1) / TMEM232 (5q22.1)MMP12 (11q22.2) / TMEM232 (5q22.1)
TMEM232 (5q22.1) / ANKRA2 (5q13.2)TMEM232 (5q22.1) / FAHD1 (16p13.3)TMEM232 (5q22.1) / USP22 (17p11.2)
UTRN (6q24.2) / TMEM232 (5q22.1)ZC3H13 (13q14.13) / TMEM232 (5q22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM232   37270
Cards
Entrez_Gene (NCBI)TMEM232  642987  transmembrane protein 232
Aliases
GeneCards (Weizmann)TMEM232
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr5:110419496-110726749 [Contig_View]  TMEM232 [Vega]
TCGA cBioPortalTMEM232
AceView (NCBI)TMEM232
Genatlas (Paris)TMEM232
WikiGenes642987
SOURCE (Princeton)TMEM232
Genetics Home Reference (NIH)TMEM232
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM232  -     chr5:110419496-110726749 -  5q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM232  -     5q22.1   [Description]    (hg19-Feb_2009)
EnsemblTMEM232 - 5q22.1 [CytoView hg19]  TMEM232 - 5q22.1 [CytoView hg38]
Mapping of homologs : NCBITMEM232 [Mapview hg19]  TMEM232 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK125070 AK296542 BC042563 BM465182 BM978936
RefSeq transcript (Entrez)NM_001039763
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMEM232
Cluster EST : UnigeneHs.729154 [ NCBI ]
CGAP (NCI)Hs.729154
Gene ExpressionTMEM232 [ NCBI-GEO ]   TMEM232 [ EBI - ARRAY_EXPRESS ]   TMEM232 [ SEEK ]   TMEM232 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM232 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)642987
GTEX Portal (Tissue expression)TMEM232
Protein : pattern, domain, 3D structure
UniProt/SwissProtC9JQI7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtC9JQI7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProC9JQI7
Splice isoforms : SwissVarC9JQI7
PhosPhoSitePlusC9JQI7
Domains : Interpro (EBI)TMEM232   
Domain families : Pfam (Sanger)TMEM232 (PF15877)   
Domain families : Pfam (NCBI)pfam15877   
Conserved Domain (NCBI)TMEM232
DMDM Disease mutations642987
Blocks (Seattle)TMEM232
SuperfamilyC9JQI7
Peptide AtlasC9JQI7
IPIIPI00900356   IPI00939978   IPI00965331   IPI00966125   IPI00974012   
Protein Interaction databases
DIP (DOE-UCLA)C9JQI7
IntAct (EBI)C9JQI7
BioGRIDTMEM232
STRING (EMBL)TMEM232
ZODIACTMEM232
Ontologies - Pathways
QuickGOC9JQI7
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkTMEM232
Atlas of Cancer Signalling NetworkTMEM232
Wikipedia pathwaysTMEM232
Orthology - Evolution
OrthoDB642987
Phylogenetic Trees/Animal Genes : TreeFamTMEM232
HOVERGENC9JQI7
HOGENOMC9JQI7
Homologs : HomoloGeneTMEM232
Homology/Alignments : Family Browser (UCSC)TMEM232
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM232 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM232
dbVarTMEM232
ClinVarTMEM232
1000_GenomesTMEM232 
Exome Variant ServerTMEM232
ExAC (Exome Aggregation Consortium)TMEM232 (select the gene name)
Genetic variants : HAPMAP642987
Genomic Variants (DGV)TMEM232 [DGVbeta]
DECIPHERTMEM232 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM232 
Mutations
ICGC Data PortalTMEM232 
TCGA Data PortalTMEM232 
Broad Tumor PortalTMEM232
OASIS PortalTMEM232 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM232  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM232
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM232
DgiDB (Drug Gene Interaction Database)TMEM232
DoCM (Curated mutations)TMEM232 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM232 (select a term)
intoGenTMEM232
Cancer3DTMEM232(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTMEM232
Genetic Testing Registry TMEM232
NextProtC9JQI7 [Medical]
TSGene642987
GENETestsTMEM232
Target ValidationTMEM232
Huge Navigator TMEM232 [HugePedia]
snp3D : Map Gene to Disease642987
BioCentury BCIQTMEM232
ClinGenTMEM232
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD642987
Chemical/Pharm GKB GenePA165660571
Clinical trialTMEM232
Miscellaneous
canSAR (ICR)TMEM232 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM232
EVEXTMEM232
GoPubMedTMEM232
iHOPTMEM232
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:46:10 CEST 2017

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