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TMEM233 (transmembrane protein 233)

Identity

Alias_symbol (synonym)IFITMD2
Other aliasDSPB2
HGNC (Hugo) TMEM233
LocusID (NCBI) 387890
Atlas_Id 74897
Location 12q24.23  [Link to chromosome band 12q24]
Location_base_pair Starts at 119593459 and ends at 119641558 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TMEM233 (12q24.23) / BORCS5 (12p13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM233   37219
Cards
Entrez_Gene (NCBI)TMEM233  387890  transmembrane protein 233
AliasesDSPB2; IFITMD2
GeneCards (Weizmann)TMEM233
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr12:119593459-119641558 [Contig_View]  TMEM233 [Vega]
TCGA cBioPortalTMEM233
AceView (NCBI)TMEM233
Genatlas (Paris)TMEM233
WikiGenes387890
SOURCE (Princeton)TMEM233
Genetics Home Reference (NIH)TMEM233
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM233  -     chr12:119593459-119641558 +  12q24.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM233  -     12q24.23   [Description]    (hg19-Feb_2009)
EnsemblTMEM233 - 12q24.23 [CytoView hg19]  TMEM233 - 12q24.23 [CytoView hg38]
Mapping of homologs : NCBITMEM233 [Mapview hg19]  TMEM233 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK296289
RefSeq transcript (Entrez)NM_001136534
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMEM233
Cluster EST : UnigeneHs.530965 [ NCBI ]
CGAP (NCI)Hs.530965
Gene ExpressionTMEM233 [ NCBI-GEO ]   TMEM233 [ EBI - ARRAY_EXPRESS ]   TMEM233 [ SEEK ]   TMEM233 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM233 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)387890
GTEX Portal (Tissue expression)TMEM233
Protein : pattern, domain, 3D structure
UniProt/SwissProtB4DJY2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtB4DJY2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProB4DJY2
Splice isoforms : SwissVarB4DJY2
PhosPhoSitePlusB4DJY2
Domains : Interpro (EBI)CD225/Dispanin_fam   
Domain families : Pfam (Sanger)CD225 (PF04505)   
Domain families : Pfam (NCBI)pfam04505   
Conserved Domain (NCBI)TMEM233
DMDM Disease mutations387890
Blocks (Seattle)TMEM233
SuperfamilyB4DJY2
Peptide AtlasB4DJY2
IPIIPI00398972   
Protein Interaction databases
DIP (DOE-UCLA)B4DJY2
IntAct (EBI)B4DJY2
BioGRIDTMEM233
STRING (EMBL)TMEM233
ZODIACTMEM233
Ontologies - Pathways
QuickGOB4DJY2
Ontology : AmiGOresponse to biotic stimulus  integral component of membrane  
Ontology : EGO-EBIresponse to biotic stimulus  integral component of membrane  
NDEx NetworkTMEM233
Atlas of Cancer Signalling NetworkTMEM233
Wikipedia pathwaysTMEM233
Orthology - Evolution
OrthoDB387890
Phylogenetic Trees/Animal Genes : TreeFamTMEM233
HOVERGENB4DJY2
HOGENOMB4DJY2
Homologs : HomoloGeneTMEM233
Homology/Alignments : Family Browser (UCSC)TMEM233
Gene fusions - Rearrangements
Tumor Fusion PortalTMEM233
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM233 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM233
dbVarTMEM233
ClinVarTMEM233
1000_GenomesTMEM233 
Exome Variant ServerTMEM233
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP387890
Genomic Variants (DGV)TMEM233 [DGVbeta]
DECIPHERTMEM233 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM233 
Mutations
ICGC Data PortalTMEM233 
TCGA Data PortalTMEM233 
Broad Tumor PortalTMEM233
OASIS PortalTMEM233 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM233  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM233
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM233
DgiDB (Drug Gene Interaction Database)TMEM233
DoCM (Curated mutations)TMEM233 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM233 (select a term)
intoGenTMEM233
Cancer3DTMEM233(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTMEM233
MedgenTMEM233
Genetic Testing Registry TMEM233
NextProtB4DJY2 [Medical]
TSGene387890
GENETestsTMEM233
Target ValidationTMEM233
Huge Navigator TMEM233 [HugePedia]
snp3D : Map Gene to Disease387890
BioCentury BCIQTMEM233
ClinGenTMEM233
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD387890
Chemical/Pharm GKB GenePA165513584
Clinical trialTMEM233
Miscellaneous
canSAR (ICR)TMEM233 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM233
EVEXTMEM233
GoPubMedTMEM233
iHOPTMEM233
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:27:38 CET 2017

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