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TMEM235 (transmembrane protein 235)

Identity

Other aliasARGM1
HGNC (Hugo) TMEM235
LocusID (NCBI) 283999
Atlas_Id 74899
Location 17q25.3  [Link to chromosome band 17q25]
Location_base_pair Starts at 78231310 and ends at 78240987 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM235   27563
Cards
Entrez_Gene (NCBI)TMEM235  283999  transmembrane protein 235
AliasesARGM1
GeneCards (Weizmann)TMEM235
Ensembl hg19 (Hinxton)ENSG00000204278 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204278 [Gene_View]  chr17:78231310-78240987 [Contig_View]  TMEM235 [Vega]
ICGC DataPortalENSG00000204278
TCGA cBioPortalTMEM235
AceView (NCBI)TMEM235
Genatlas (Paris)TMEM235
WikiGenes283999
SOURCE (Princeton)TMEM235
Genetics Home Reference (NIH)TMEM235
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM235  -     chr17:78231310-78240987 +  17q25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM235  -     17q25.3   [Description]    (hg19-Feb_2009)
EnsemblTMEM235 - 17q25.3 [CytoView hg19]  TMEM235 - 17q25.3 [CytoView hg38]
Mapping of homologs : NCBITMEM235 [Mapview hg19]  TMEM235 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC036810 BC042066 BC148207 BI757060 BI757981
RefSeq transcript (Entrez)NM_001145529 NM_001204210 NM_001204211 NM_001204212
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMEM235
Cluster EST : UnigeneHs.632228 [ NCBI ]
CGAP (NCI)Hs.632228
Alternative Splicing GalleryENSG00000204278
Gene ExpressionTMEM235 [ NCBI-GEO ]   TMEM235 [ EBI - ARRAY_EXPRESS ]   TMEM235 [ SEEK ]   TMEM235 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM235 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)283999
GTEX Portal (Tissue expression)TMEM235
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NFC5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NFC5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NFC5
Splice isoforms : SwissVarA6NFC5
PhosPhoSitePlusA6NFC5
Domains : Interpro (EBI)PMP22/EMP/MP20/Claudin   
Domain families : Pfam (Sanger)Claudin_2 (PF13903)   
Domain families : Pfam (NCBI)pfam13903   
Conserved Domain (NCBI)TMEM235
DMDM Disease mutations283999
Blocks (Seattle)TMEM235
SuperfamilyA6NFC5
Human Protein AtlasENSG00000204278
Peptide AtlasA6NFC5
IPIIPI00976859   IPI01009682   IPI00982730   IPI01021720   IPI00923446   
Protein Interaction databases
DIP (DOE-UCLA)A6NFC5
IntAct (EBI)A6NFC5
FunCoupENSG00000204278
BioGRIDTMEM235
STRING (EMBL)TMEM235
ZODIACTMEM235
Ontologies - Pathways
QuickGOA6NFC5
Ontology : AmiGOendoplasmic reticulum  integral component of membrane  apical plasma membrane  
Ontology : EGO-EBIendoplasmic reticulum  integral component of membrane  apical plasma membrane  
NDEx NetworkTMEM235
Atlas of Cancer Signalling NetworkTMEM235
Wikipedia pathwaysTMEM235
Orthology - Evolution
OrthoDB283999
GeneTree (enSembl)ENSG00000204278
Phylogenetic Trees/Animal Genes : TreeFamTMEM235
HOVERGENA6NFC5
HOGENOMA6NFC5
Homologs : HomoloGeneTMEM235
Homology/Alignments : Family Browser (UCSC)TMEM235
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM235 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM235
dbVarTMEM235
ClinVarTMEM235
1000_GenomesTMEM235 
Exome Variant ServerTMEM235
ExAC (Exome Aggregation Consortium)TMEM235 (select the gene name)
Genetic variants : HAPMAP283999
Genomic Variants (DGV)TMEM235 [DGVbeta]
DECIPHERTMEM235 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM235 
Mutations
ICGC Data PortalTMEM235 
TCGA Data PortalTMEM235 
Broad Tumor PortalTMEM235
OASIS PortalTMEM235 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM235  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM235
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM235
DgiDB (Drug Gene Interaction Database)TMEM235
DoCM (Curated mutations)TMEM235 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM235 (select a term)
intoGenTMEM235
Cancer3DTMEM235(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTMEM235
Genetic Testing Registry TMEM235
NextProtA6NFC5 [Medical]
TSGene283999
GENETestsTMEM235
Target ValidationTMEM235
Huge Navigator TMEM235 [HugePedia]
snp3D : Map Gene to Disease283999
BioCentury BCIQTMEM235
ClinGenTMEM235
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD283999
Chemical/Pharm GKB GenePA166048981
Clinical trialTMEM235
Miscellaneous
canSAR (ICR)TMEM235 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM235
EVEXTMEM235
GoPubMedTMEM235
iHOPTMEM235
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:41:53 CEST 2017

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